KEGG   PATHWAY: ffc00020
Entry
ffc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fusarium falciforme
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ffc00020  Citrate cycle (TCA cycle)
ffc00020

Module
ffc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ffc00020]
ffc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ffc00020]
ffc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ffc00020]
Other DBs
GO: 0006099
Organism
Fusarium falciforme [GN:ffc]
Gene
NCS54_00746700  2-methylcitrate synthase, mitochondrial (Methylcitrate synthase) [KO:K01647] [EC:2.3.3.1]
NCS54_00041000  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCS54_00539300  ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
NCS54_01446200  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS54_00507100  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS54_00629400  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS54_01202200  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS54_00725200  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCS54_00220600  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
NCS54_00274200  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
NCS54_00644500  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
NCS54_01056900  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
NCS54_00509000  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCS54_00644600  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCS54_00511500  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCS54_00494000  CoA-binding domain-containing protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NCS54_01247900  Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NCS54_00652300  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NCS54_00558000  Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
NCS54_01029100  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
NCS54_01004900  Hypothetical protein [KO:K00236]
NCS54_01253200  Hypothetical protein [KO:K00236]
NCS54_00153000  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit [KO:K00237]
NCS54_00410600  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCS54_00811400  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS54_00846100  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS54_00884300  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS54_00550800  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NCS54_00378400  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCS54_00444900  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NCS54_00807300  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ffc00010  Glycolysis / Gluconeogenesis
ffc00053  Ascorbate and aldarate metabolism
ffc00061  Fatty acid biosynthesis
ffc00062  Fatty acid elongation
ffc00071  Fatty acid degradation
ffc00190  Oxidative phosphorylation
ffc00220  Arginine biosynthesis
ffc00250  Alanine, aspartate and glutamate metabolism
ffc00280  Valine, leucine and isoleucine degradation
ffc00350  Tyrosine metabolism
ffc00470  D-Amino acid metabolism
ffc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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