KEGG   PATHWAY: fkr00020
Entry
fkr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fusarium keratoplasticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fkr00020  Citrate cycle (TCA cycle)
fkr00020

Module
fkr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fkr00020]
fkr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fkr00020]
fkr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fkr00020]
fkr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fkr00020]
fkr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fkr00020]
Other DBs
GO: 0006099
Organism
Fusarium keratoplasticum [GN:fkr]
Gene
NCS57_00039200  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCS57_00787600  2-methylcitrate synthase, mitochondrial (Methylcitrate synthase) [KO:K01647] [EC:2.3.3.1]
NCS57_00577500  ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
NCS57_01193600  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS57_01429400  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS57_00545600  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS57_00800300  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
NCS57_00765500  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCS57_00215600  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
NCS57_00270000  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
NCS57_01050700  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
NCS57_00683500  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
NCS57_00547500  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCS57_00683400  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCS57_00549800  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCS57_01262100  Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NCS57_00532000  CoA-binding domain-containing protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NCS57_00692200  Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NCS57_00595800  Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
NCS57_01022700  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
NCS57_00999100  hypothetical protein [KO:K00236]
NCS57_01256300  hypothetical protein [KO:K00236]
NCS57_00150100  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit [KO:K00237]
NCS57_00415600  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCS57_00854700  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS57_00889000  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS57_01457700  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
NCS57_00589100  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NCS57_00383900  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCS57_01039500  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NCS57_00451700  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NCS57_00850500  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fkr00010  Glycolysis / Gluconeogenesis
fkr00053  Ascorbate and aldarate metabolism
fkr00061  Fatty acid biosynthesis
fkr00062  Fatty acid elongation
fkr00071  Fatty acid degradation
fkr00190  Oxidative phosphorylation
fkr00220  Arginine biosynthesis
fkr00250  Alanine, aspartate and glutamate metabolism
fkr00280  Valine, leucine and isoleucine degradation
fkr00350  Tyrosine metabolism
fkr00470  D-Amino acid metabolism
fkr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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