KEGG   PATHWAY: fme04144
Entry
fme04144                    Pathway                                
Name
Endocytosis - Fomitiporia mediterranea
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
fme04144  Endocytosis
fme04144

Other DBs
GO: 0006897
Organism
Fomitiporia mediterranea [GN:fme]
Gene
FOMMEDRAFT_168107  CPS1 protein [KO:K07941]
FOMMEDRAFT_98391  SAICAR synthase-like protein [KO:K00889] [EC:2.7.1.68]
FOMMEDRAFT_97626  phospholipase D [KO:K01115] [EC:3.1.4.4]
FOMMEDRAFT_142749  phospholipase D [KO:K01115] [EC:3.1.4.4]
FOMMEDRAFT_115867  clathrin heavy chain [KO:K04646]
FOMMEDRAFT_83249  Adaptor protein complex AP-2 alpha subunit [KO:K11824]
FOMMEDRAFT_104422  Adaptor protein complex beta subunit [KO:K11825]
FOMMEDRAFT_88067  clathrin adaptor, mu subunit [KO:K11826]
FOMMEDRAFT_169601  clathrin coat assembly protein ap17 [KO:K11827]
FOMMEDRAFT_122221  BAR-domain-containing protein [KO:K12562]
FOMMEDRAFT_91102  ENTH-domain-containing protein [KO:K12471]
FOMMEDRAFT_124323  hypothetical protein [KO:K12472]
FOMMEDRAFT_18403  hypothetical protein [KO:K19366]
FOMMEDRAFT_117411  HECT-domain-containing protein [KO:K10591] [EC:2.3.2.26]
FOMMEDRAFT_144346  WH1-domain-containing protein [KO:K23612]
FOMMEDRAFT_99057  Actin/actin-like protein [KO:K17260]
FOMMEDRAFT_103037  actin binding protein [KO:K18584]
FOMMEDRAFT_124546  actin-related protein ARPC3 [KO:K05757]
FOMMEDRAFT_122862  actin-related protein ARPC2 [KO:K05758]
FOMMEDRAFT_169456  actin-related protein ARPC3 [KO:K05756]
FOMMEDRAFT_108293  arp2/3 complex [KO:K05755]
FOMMEDRAFT_139721  actin-related protein ARPC5 [KO:K05754]
FOMMEDRAFT_124771  heat shock protein HSS1 [KO:K03283]
FOMMEDRAFT_18191  heat shock protein 70 [KO:K03283]
FOMMEDRAFT_104720  actin-like ATPase domain-containing protein [KO:K03283]
FOMMEDRAFT_129814  F-actin capping protein, alpha subunit [KO:K10364]
FOMMEDRAFT_117353  F-actin capping protein, beta subunit [KO:K10365]
FOMMEDRAFT_144988  Metallo-dependent phosphatase [KO:K18467]
FOMMEDRAFT_168445  vacuolar protein sorting-associated protein 26 [KO:K18466]
FOMMEDRAFT_19740  vacuolar protein sorting-associated protein 35 [KO:K18468]
FOMMEDRAFT_85303  Phox-like protein [KO:K17918]
FOMMEDRAFT_170050  cysteine proteinase [KO:K11839] [EC:3.4.19.12]
FOMMEDRAFT_75427  Mov34/MPN/PAD-1 [KO:K11866] [EC:3.4.19.12]
FOMMEDRAFT_86688  Mov34-domain-containing protein [KO:K11866] [EC:3.4.19.12]
FOMMEDRAFT_19344  hypothetical protein [KO:K07897]
FOMMEDRAFT_107311  ubiquitin binding protein [KO:K12182]
FOMMEDRAFT_74561  hypothetical protein [KO:K04705]
FOMMEDRAFT_153369  UEV-domain-containing protein [KO:K12183]
FOMMEDRAFT_93414  VPS28-domain-containing protein [KO:K12184]
FOMMEDRAFT_159986  VPS28-domain-containing protein [KO:K12184]
FOMMEDRAFT_170739  winged helix DNA-binding domain-containing protein [KO:K12188]
FOMMEDRAFT_105283  hypothetical protein [KO:K12190]
FOMMEDRAFT_137803  ESCRT-II complex, vps25 subunit [KO:K12189]
FOMMEDRAFT_167148  hypothetical protein [KO:K12195]
FOMMEDRAFT_158374  hypothetical protein [KO:K12194]
FOMMEDRAFT_89532  vacuolar sorting protein Vps24 [KO:K12193]
FOMMEDRAFT_145117  vacuolar sorting protein DID4 [KO:K12191]
FOMMEDRAFT_109799  Snf7-domain-containing protein [KO:K15053]
FOMMEDRAFT_19504  AAA-domain-containing protein [KO:K12196]
FOMMEDRAFT_167300  DUF605-domain-containing protein [KO:K12199]
FOMMEDRAFT_21931  hypothetical protein [KO:K12197]
FOMMEDRAFT_21472  hypothetical protein [KO:K12198]
FOMMEDRAFT_161638  DUF292-domain-containing protein [KO:K19476]
FOMMEDRAFT_144555  BRO1-domain-containing protein [KO:K12200]
FOMMEDRAFT_101108  hypothetical protein [KO:K17917]
FOMMEDRAFT_96248  small GTPase-binding protein [KO:K04513]
FOMMEDRAFT_121735  GTP-binding protein ypt5 [KO:K07889]
FOMMEDRAFT_143148  ras-domain-containing protein [KO:K07889]
FOMMEDRAFT_168848  hypothetical protein [KO:K12481]
FOMMEDRAFT_97667  vacuolar protein sorting-associated protein 45 [KO:K12479]
FOMMEDRAFT_82758  lipid binding protein [KO:K17919]
FOMMEDRAFT_107155  GTP-binding protein SAS1 [KO:K07901]
FOMMEDRAFT_132608  ras-domain-containing protein [KO:K07904]
FOMMEDRAFT_104478  kinesin heavy chain [KO:K10396]
FOMMEDRAFT_26993  small GTPase Cdc42 [KO:K04393]
FOMMEDRAFT_165785  ArfGap-domain-containing protein [KO:K12486]
FOMMEDRAFT_126649  ArfGap-domain-containing protein [KO:K12492]
FOMMEDRAFT_114090  ArfGap-domain-containing protein [KO:K12493]
FOMMEDRAFT_133996  hypothetical protein [KO:K12494]
FOMMEDRAFT_88337  Sec7-domain-containing protein [KO:K18442]
FOMMEDRAFT_145161  Sec7-domain-containing protein [KO:K18443]
FOMMEDRAFT_29893  ARF/SAR [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
fme04070  Phosphatidylinositol signaling system
fme04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
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