KEGG   PATHWAY: gab00630
Entry
gab00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gossypium arboreum (tree cotton)
Class
Metabolism; Carbohydrate metabolism
Pathway map
gab00630  Glyoxylate and dicarboxylate metabolism
gab00630

Module
gab_M00012  Glyoxylate cycle [PATH:gab00630]
gab_M00532  Photorespiration [PATH:gab00630]
gab_M00621  Glycine cleavage system [PATH:gab00630]
Other DBs
GO: 0046487 0043648
Organism
Gossypium arboreum (tree cotton) [GN:gab]
Gene
108476266  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
108463989  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108486620  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
108457683  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
108474880  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108489391  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108475844  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108454854  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108451628  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
108480091  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
108482748  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108476189  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
108456316  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
108483397  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108469458  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
108467047  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108480222  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108453642  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
108458189  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
108453250  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108471646  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
108453498  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108479334  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108479341  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
108453591  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108456604  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
108453061  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108474110  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
108483761  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
108474198  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
108480566  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
108470695  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
108480699  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
108473472  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
108486507  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
108449922  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
108454170  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
108483079  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
108450562  LOW QUALITY PROTEIN: catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
108452378  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
108480625  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108453317  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108461633  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108482795  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108453839  hydroxyphenylpyruvate reductase [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108466784  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108473611  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108473426  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108464364  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
108480177  phosphoglycolate phosphatase 2 isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
108460394  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
11540297  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
108481960  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
108471228  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108471042  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108453366  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
108449982  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108450676  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108473496  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108466881  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
108482015  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
108475410  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
108452012  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
108455480  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
108454683  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
108462898  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
108460245  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
108479659  serine hydroxymethyltransferase 2, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
108489305  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
108474114  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
108456985  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
108475949  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
108486534  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
108464541  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
108460652  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
108453532  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
108486319  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
108456146  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
108486533  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
108453080  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
108476075  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
108457062  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
108456762  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
108476672  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
108481779  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
108462979  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
108461868  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
108451786  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
108458079  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
108482457  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
108470167  formyltetrahydrofolate deformylase 2, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
108467579  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
108470071  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gab00010  Glycolysis / Gluconeogenesis
gab00020  Citrate cycle (TCA cycle)
gab00030  Pentose phosphate pathway
gab00053  Ascorbate and aldarate metabolism
gab00071  Fatty acid degradation
gab00230  Purine metabolism
gab00250  Alanine, aspartate and glutamate metabolism
gab00260  Glycine, serine and threonine metabolism
gab00620  Pyruvate metabolism
gab00710  Carbon fixation by Calvin cycle
gab00750  Vitamin B6 metabolism
gab00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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