KEGG   PATHWAY: gdj00010
Entry
gdj00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Gluconacetobacter diazotrophicus PA1 5 (JGI)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gdj00010  Glycolysis / Gluconeogenesis
gdj00010

Module
gdj_M00002  Glycolysis, core module involving three-carbon compounds [PATH:gdj00010]
gdj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gdj00010]
gdj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gdj00010]
Other DBs
GO: 0006096 0006094
Organism
Gluconacetobacter diazotrophicus PA1 5 (JGI) [GN:gdj]
Gene
Gdia_3540  glucokinase [KO:K00845] [EC:2.7.1.2]
Gdia_2349  transaldolase [KO:K13810] [EC:2.2.1.2 5.3.1.9]
Gdia_2503  fructose-1,6-bisphosphatase, class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Gdia_1516  Fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
Gdia_0154  Triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
Gdia_0519  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Gdia_0520  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Gdia_3023  phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [KO:K15633] [EC:5.4.2.12]
Gdia_0149  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Gdia_1999  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Gdia_2026  pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
Gdia_0161  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Gdia_0162  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Gdia_3501  alpha/beta hydrolase fold [KO:K00627] [EC:2.3.1.12]
Gdia_0163  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Gdia_0164  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gdia_2120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gdia_2242  thiamine pyrophosphate protein TPP binding domain protein [KO:K01568] [EC:4.1.1.1]
Gdia_0079  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Gdia_0720  Alcohol dehydrogenase GroES domain protein [KO:K13953] [EC:1.1.1.1]
Gdia_1118  zinc-binding alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
Gdia_2808  Alcohol dehydrogenase zinc-binding domain protein [KO:K00001] [EC:1.1.1.1]
Gdia_0772  Alcohol dehydrogenase zinc-binding domain protein [KO:K13979] [EC:1.1.1.2]
Gdia_0262  PQQ-dependent dehydrogenase, methanol/ethanol family [KO:K22473] [EC:1.1.5.5]
Gdia_0263  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Gdia_1163  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Gdia_1366  Aldehyde dehydrogenase (NAD(+)) [KO:K00128] [EC:1.2.1.3]
Gdia_1545  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Gdia_2370  Aldehyde Dehydrogenase [KO:K00138] [EC:1.2.1.-]
Gdia_0695  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Gdia_1153  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Gdia_0324  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Gdia_3234  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Gdia_1393  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gdj00020  Citrate cycle (TCA cycle)
gdj00030  Pentose phosphate pathway
gdj00500  Starch and sucrose metabolism
gdj00620  Pyruvate metabolism
gdj00640  Propanoate metabolism
gdj00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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