KEGG   PATHWAY: gfu00970
Entry
gfu00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Gemmobacter fulvus
Class
Genetic Information Processing; Translation
Pathway map
gfu00970  Aminoacyl-tRNA biosynthesis
gfu00970

Organism
Gemmobacter fulvus [GN:gfu]
Gene
KM031_07825  tRNA-Ala [KO:K14218]
KM031_08930  tRNA-Ala [KO:K14218]
KM031_22375  tRNA-Ala [KO:K14218]
KM031_06135  tRNA-Ala [KO:K14218]
KM031_06525  tRNA-Arg [KO:K14219]
KM031_01290  tRNA-Arg [KO:K14219]
KM031_15460  tRNA-Asn [KO:K14220]
KM031_01690  tRNA-Asp [KO:K14221]
KM031_01695  tRNA-Asp [KO:K14221]
KM031_01900  tRNA-Cys [KO:K14222]
KM031_00995  tRNA-Gln [KO:K14223]
KM031_15705  tRNA-Gln [KO:K14223]
KM031_02765  tRNA-Glu [KO:K14224]
KM031_04230  tRNA-Glu [KO:K14224]
KM031_03190  tRNA-Gly [KO:K14225]
KM031_01120  tRNA-Gly [KO:K14225]
KM031_04860  tRNA-Gly [KO:K14225]
KM031_04865  tRNA-Gly [KO:K14225]
KM031_15220  tRNA-His [KO:K14226]
KM031_07820  tRNA-Ile [KO:K14227]
KM031_08925  tRNA-Ile [KO:K14227]
KM031_22370  tRNA-Ile [KO:K14227]
KM031_15310  tRNA-Leu [KO:K14228]
KM031_16320  tRNA-Leu [KO:K14228]
KM031_10660  tRNA-Leu [KO:K14228]
KM031_14895  tRNA-Leu [KO:K14228]
KM031_10545  tRNA-Lys [KO:K14229]
KM031_07805  tRNA-Met [KO:K14230]
KM031_08910  tRNA-Met [KO:K14230]
KM031_22355  tRNA-Met [KO:K14230]
KM031_04575  tRNA-Ile [KO:K14230]
KM031_12990  tRNA-Met [KO:K14230]
KM031_12395  tRNA-Phe [KO:K14231]
KM031_07045  tRNA-Pro [KO:K14232]
KM031_01380  tRNA-Pro [KO:K14232]
KM031_04325  tRNA-Pro [KO:K14232]
KM031_14585  tRNA-Ser [KO:K14233]
KM031_13995  tRNA-Ser [KO:K14233]
KM031_15410  tRNA-Ser [KO:K14233]
KM031_10120  tRNA-Ser [KO:K14233]
KM031_12460  tRNA-Thr [KO:K14234]
KM031_11020  tRNA-Thr [KO:K14234]
KM031_11985  tRNA-Trp [KO:K14235]
KM031_02260  tRNA-Val [KO:K14237]
KM031_01715  tRNA-Val [KO:K14237]
KM031_10845  tRNA-Val [KO:K14237]
KM031_05975  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
KM031_14425  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
KM031_05170  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
KM031_08520  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
KM031_17395  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
KM031_14300  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
KM031_05175  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
KM031_01235  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
KM031_04770  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
KM031_15955  glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
KM031_15970  glyS; glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
KM031_04180  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
KM031_02345  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
KM031_01325  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
KM031_05625  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
KM031_11575  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
KM031_14375  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
KM031_08605  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
KM031_05925  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
KM031_13405  lysine--tRNA ligase [KO:K04566] [EC:6.1.1.6]
KM031_01415  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
KM031_15065  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
KM031_07915  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
KM031_11785  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
KM031_06625  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
KM031_01955  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
KM031_03710  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
gfu00250  Alanine, aspartate and glutamate metabolism
gfu00260  Glycine, serine and threonine metabolism
gfu00270  Cysteine and methionine metabolism
gfu00290  Valine, leucine and isoleucine biosynthesis
gfu00300  Lysine biosynthesis
gfu00330  Arginine and proline metabolism
gfu00340  Histidine metabolism
gfu00380  Tryptophan metabolism
gfu00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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