KEGG   PATHWAY: goq00630
Entry
goq00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gordonia phthalatica
Class
Metabolism; Carbohydrate metabolism
Pathway map
goq00630  Glyoxylate and dicarboxylate metabolism
goq00630

Module
goq_M00621  Glycine cleavage system [PATH:goq00630]
goq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:goq00630]
Other DBs
GO: 0046487 0043648
Organism
Gordonia phthalatica [GN:goq]
Gene
ACH46_02620  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
ACH46_02035  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
ACH46_04615  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
ACH46_04815  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
ACH46_18990  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
ACH46_17655  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
ACH46_11235  malate synthase [KO:K01638] [EC:2.3.3.9]
ACH46_06395  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
ACH46_03960  hypothetical protein [KO:K01647] [EC:2.3.3.1]
ACH46_06730  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACH46_07950  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACH46_10250  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACH46_01565  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_07345  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_07755  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_19620  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_05230  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_05770  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_18870  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_18875  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_19125  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_17465  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_17495  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_17635  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_13110  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACH46_07340  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
ACH46_06770  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
ACH46_06805  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
ACH46_06800  hypothetical protein [KO:K27095]
ACH46_13025  propionyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
ACH46_10320  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ACH46_10325  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ACH46_13200  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
ACH46_18125  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
ACH46_00835  catalase [KO:K03781] [EC:1.11.1.6]
ACH46_12925  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
ACH46_12835  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACH46_12865  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACH46_07200  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ACH46_05355  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ACH46_11350  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
ACH46_12760  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
ACH46_02575  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACH46_11375  glycine cleavage system protein H [KO:K02437]
ACH46_12735  hypothetical protein [KO:K00865] [EC:2.7.1.165]
ACH46_07035  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ACH46_14325  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACH46_14330  dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACH46_14320  ferredoxin [KO:K00124]
ACH46_02720  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
ACH46_14335  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
goq00010  Glycolysis / Gluconeogenesis
goq00020  Citrate cycle (TCA cycle)
goq00030  Pentose phosphate pathway
goq00071  Fatty acid degradation
goq00230  Purine metabolism
goq00250  Alanine, aspartate and glutamate metabolism
goq00260  Glycine, serine and threonine metabolism
goq00620  Pyruvate metabolism
goq00710  Carbon fixation by Calvin cycle
goq00750  Vitamin B6 metabolism
goq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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