KEGG   PATHWAY: gsub00630
Entry
gsub00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Geomonas subterranea
Class
Metabolism; Carbohydrate metabolism
Pathway map
gsub00630  Glyoxylate and dicarboxylate metabolism
gsub00630

Module
gsub_M00621  Glycine cleavage system [PATH:gsub00630]
Other DBs
GO: 0046487 0043648
Organism
Geomonas subterranea [GN:gsub]
Gene
KP001_20220  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
KP001_09315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KP001_03270  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KP001_04955  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KP001_05405  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KP001_00900  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KP001_01530  thiolase family protein [KO:K00626] [EC:2.3.1.9]
KP001_02010  thiolase family protein [KO:K00626] [EC:2.3.1.9]
KP001_08780  thiolase family protein [KO:K00626] [EC:2.3.1.9]
KP001_13430  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
KP001_07940  cobalamin B12-binding domain-containing protein [KO:K01849] [EC:5.4.99.2]
KP001_13425  methylmalonyl-CoA mutase family protein [KO:K01848] [EC:5.4.99.2]
KP001_09345  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KP001_13400  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KP001_09340  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
KP001_13405  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
KP001_03255  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
KP001_14950  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
KP001_12340  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
KP001_10225  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KP001_10235  glutamine synthetase III [KO:K01915] [EC:6.3.1.2]
KP001_10360  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KP001_14335  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
KP001_14330  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
KP001_14345  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KP001_12625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KP001_02840  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KP001_14340  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KP001_18970  glycerate kinase [KO:K11529] [EC:2.7.1.165]
KP001_04910  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
KP001_04915  4Fe-4S dicluster domain-containing protein [KO:K00124]
KP001_19085  cyclase family protein [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gsub00010  Glycolysis / Gluconeogenesis
gsub00020  Citrate cycle (TCA cycle)
gsub00030  Pentose phosphate pathway
gsub00053  Ascorbate and aldarate metabolism
gsub00071  Fatty acid degradation
gsub00230  Purine metabolism
gsub00250  Alanine, aspartate and glutamate metabolism
gsub00260  Glycine, serine and threonine metabolism
gsub00620  Pyruvate metabolism
gsub00710  Carbon fixation by Calvin cycle
gsub00750  Vitamin B6 metabolism
gsub00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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