KEGG   PATHWAY: haf00630
Entry
haf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Halomonas sp. SF2003
Class
Metabolism; Carbohydrate metabolism
Pathway map
haf00630  Glyoxylate and dicarboxylate metabolism
haf00630

Module
haf_M00621  Glycine cleavage system [PATH:haf00630]
Other DBs
GO: 0046487 0043648
Organism
Halomonas sp. SF2003 [GN:haf]
Gene
C8233_14950  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C8233_08325  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
C8233_13850  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C8233_10755  malate synthase G [KO:K01638] [EC:2.3.3.9]
C8233_08570  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C8233_12860  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C8233_16190  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C8233_08335  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C8233_10360  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
C8233_12530  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
C8233_05310  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
C8233_05315  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
C8233_05320  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
C8233_08425  catalase [KO:K03781] [EC:1.11.1.6]
C8233_08430  catalase HPII [KO:K03781] [EC:1.11.1.6]
C8233_00275  catalase [KO:K03781] [EC:1.11.1.6]
C8233_03420  hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C8233_14540  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C8233_02490  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
C8233_08010  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C8233_03965  hypothetical protein [KO:K01091] [EC:3.1.3.18]
C8233_06660  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C8233_03690  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C8233_11610  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C8233_07760  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
C8233_07775  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
C8233_15645  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C8233_08865  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C8233_05205  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
C8233_03695  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
C8233_03980  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
C8233_05190  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
C8233_08535  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C8233_05285  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C8233_05200  gcvH; glycine cleavage system protein GcvH [KO:K02437]
C8233_16860  glycerate kinase [KO:K00865] [EC:2.7.1.165]
C8233_04445  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
C8233_07315  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C8233_02725  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
C8233_08930  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
C8233_08935  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
C8233_02730  4Fe-4S dicluster domain-containing protein [KO:K00124]
C8233_02735  formate dehydrogenase subunit gamma [KO:K00127]
C8233_03620  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C8233_16775  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C8233_08840  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C8233_04770  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
haf00010  Glycolysis / Gluconeogenesis
haf00020  Citrate cycle (TCA cycle)
haf00030  Pentose phosphate pathway
haf00053  Ascorbate and aldarate metabolism
haf00071  Fatty acid degradation
haf00230  Purine metabolism
haf00250  Alanine, aspartate and glutamate metabolism
haf00260  Glycine, serine and threonine metabolism
haf00620  Pyruvate metabolism
haf00710  Carbon fixation by Calvin cycle
haf00750  Vitamin B6 metabolism
haf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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