KEGG   PATHWAY: hbq03430
Entry
hbq03430                    Pathway                                
Name
Mismatch repair - Halotia branconii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hbq03430  Mismatch repair
hbq03430

Other DBs
GO: 0006298
Organism
Halotia branconii [GN:hbq]
Gene
QI031_05795  mutS; DNA mismatch repair protein MutS [KO:K03555]
QI031_10580  endonuclease MutS2 [KO:K07456]
QI031_02060  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
QI031_06760  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
QI031_22915  DEAD/DEAH box helicase [KO:K03657] [EC:5.6.2.4]
QI031_27870  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
QI031_16835  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
QI031_16845  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
QI031_13030  DHH family phosphoesterase [KO:K07462] [EC:3.1.-.-]
QI031_21200  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
QI031_10305  single-stranded DNA-binding protein [KO:K03111]
QI031_12225  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
QI031_13405  trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C [KO:K02337] [EC:2.7.7.7]
QI031_14910  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
QI031_03685  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
QI031_06435  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
QI031_09760  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
QI031_12685  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
QI031_06240  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
QI031_16390  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
QI031_17485  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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