KEGG   PATHWAY: hcp00020
Entry
hcp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter cinaedi PAGU611
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hcp00020  Citrate cycle (TCA cycle)
hcp00020

Module
hcp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hcp00020]
hcp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hcp00020]
Other DBs
GO: 0006099
Organism
Helicobacter cinaedi PAGU611 [GN:hcp]
Gene
HCN_0459  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HCN_0892  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HCN_2044  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HCN_1586  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HCN_1587  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HCN_1588  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HCN_1585  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
HCN_0973  hypothetical protein [KO:K00241]
HCN_1823  frdA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HCN_1824  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HCN_1822  frdC; fumarate reductase cytochrome b-556 subunit [KO:K25996]
HCN_1104  ttdA; fumarate hydratase subunit A [KO:K01677] [EC:4.2.1.2]
HCN_1103  ttdB; fumarate hydratase subunit B [KO:K01678] [EC:4.2.1.2]
HCN_1584  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HCN_0878  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HCN_0952  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HCN_1089  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
HCN_0380  porA; pyruvate flavodoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HCN_0381  porB; pyruvate flavodoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
HCN_0378  porG; pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HCN_0379  porD; pyruvate flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hcp00010  Glycolysis / Gluconeogenesis
hcp00061  Fatty acid biosynthesis
hcp00071  Fatty acid degradation
hcp00190  Oxidative phosphorylation
hcp00220  Arginine biosynthesis
hcp00250  Alanine, aspartate and glutamate metabolism
hcp00280  Valine, leucine and isoleucine degradation
hcp00350  Tyrosine metabolism
hcp00470  D-Amino acid metabolism
hcp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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