KEGG   PATHWAY: hvl00020
Entry
hvl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hymenobacter volaticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hvl00020  Citrate cycle (TCA cycle)
hvl00020

Module
hvl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hvl00020]
hvl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hvl00020]
hvl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hvl00020]
Other DBs
GO: 0006099
Organism
Hymenobacter volaticus [GN:hvl]
Gene
MUN86_10695  citrate synthase [KO:K01647] [EC:2.3.3.1]
MUN86_06560  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MUN86_03460  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUN86_23585  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUN86_21740  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
MUN86_00925  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MUN86_08025  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MUN86_00980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN86_05975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN86_03630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUN86_06980  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUN86_06500  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUN86_06510  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MUN86_28575  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MUN86_22495  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUN86_05035  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUN86_07395  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MUN86_08300  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MUN86_12730  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MUN86_22980  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MUN86_09190  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MUN86_15720  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hvl00010  Glycolysis / Gluconeogenesis
hvl00053  Ascorbate and aldarate metabolism
hvl00061  Fatty acid biosynthesis
hvl00071  Fatty acid degradation
hvl00190  Oxidative phosphorylation
hvl00220  Arginine biosynthesis
hvl00250  Alanine, aspartate and glutamate metabolism
hvl00280  Valine, leucine and isoleucine degradation
hvl00350  Tyrosine metabolism
hvl00470  D-Amino acid metabolism
hvl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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