KEGG   PATHWAY: ial03018
Entry
ial03018                    Pathway                                
Name
RNA degradation - Ignavibacterium album
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ial03018  RNA degradation
ial03018

Other DBs
GO: 0006401
Organism
Ignavibacterium album [GN:ial]
Gene
IALB_2801  Enolase [KO:K01689] [EC:4.2.1.11]
IALB_0644  pnp; Polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
IALB_0585  Exoribonuclease R [KO:K12573] [EC:3.1.13.1]
IALB_1138  Superfamily II DNA/RNA helicase [KO:K05592] [EC:5.6.2.7]
IALB_1274  recQ; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
IALB_0068  recQ; Superfamily II DNA helicase [KO:K03654] [EC:5.6.2.4]
IALB_1615  rho; Transcription termination factor Rho [KO:K03628]
IALB_1443  Putative hydrolase [KO:K18682] [EC:3.1.-.-]
IALB_1911  dnaK; Molecular chaperone DnaK [KO:K04043]
IALB_2179  groEL; Chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
IALB_0661  ppk; Polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
IALB_1702  cca; tRNA nucleotidyltransferase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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