KEGG   PATHWAY: ibu00020
Entry
ibu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Intestinimonas butyriciproducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ibu00020  Citrate cycle (TCA cycle)
ibu00020

Module
ibu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ibu00020]
ibu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ibu00020]
Other DBs
GO: 0006099
Organism
Intestinimonas butyriciproducens [GN:ibu]
Gene
IB211_02690  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
IB211_00354c  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
IB211_01189c  Putative enzyme [KO:K01681] [EC:4.2.1.3]
IB211_00690c  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IB211_01148  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IB211_03177c  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
IB211_03176c  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
IB211_00697c  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
IB211_00758  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
IB211_00316c  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
IB211_00315c  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
IB211_00318c  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
IB211_00317c  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
IB211_00332c  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ibu00010  Glycolysis / Gluconeogenesis
ibu00061  Fatty acid biosynthesis
ibu00071  Fatty acid degradation
ibu00190  Oxidative phosphorylation
ibu00220  Arginine biosynthesis
ibu00250  Alanine, aspartate and glutamate metabolism
ibu00280  Valine, leucine and isoleucine degradation
ibu00350  Tyrosine metabolism
ibu00470  D-Amino acid metabolism
ibu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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