KEGG   PATHWAY: jre00030
Entry
jre00030                    Pathway                                
Name
Pentose phosphate pathway - Juglans regia (English walnut)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jre00030  Pentose phosphate pathway
jre00030

Module
jre_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:jre00030]
jre_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:jre00030]
jre_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:jre00030]
jre_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:jre00030]
Other DBs
GO: 0006098
Organism
Juglans regia (English walnut) [GN:jre]
Gene
108985058  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
108995559  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
108987869  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108985468  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108982085  glucose-6-phosphate 1-dehydrogenase, chloroplastic isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
109003215  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
109010115  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
109019736  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
109000733  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108986276  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
108989396  probable 6-phosphogluconolactonase 1 isoform X1 [KO:K01057] [EC:3.1.1.31]
108989593  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
109007547  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
109014387  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
108997435  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108988132  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108989414  6-phosphogluconate dehydrogenase, decarboxylating 1-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
109005994  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
108988183  6-phosphogluconate dehydrogenase, decarboxylating 2-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
109012183  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
109013305  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
109011355  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
109019027  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
109011398  transaldolase [KO:K00616] [EC:2.2.1.2]
108997328  transaldolase-like [KO:K00616] [EC:2.2.1.2]
109006717  transaldolase [KO:K00616] [EC:2.2.1.2]
108981661  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
109007598  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
108999587  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
109015116  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
109011716  ribokinase [KO:K00852] [EC:2.7.1.15]
109003961  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
108998598  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
108995508  phosphoglucomutase, cytoplasmic-like [KO:K01835] [EC:5.4.2.2]
109006127  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
108989555  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
109005754  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
109007413  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
109000833  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
109005232  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
109012892  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
108997215  gluconokinase-like isoform X1 [KO:K00851] [EC:2.7.1.12]
109005150  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
108985009  fructose-bisphosphate aldolase 6, cytosolic-like [KO:K01623] [EC:4.1.2.13]
108994846  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
109006536  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
109007785  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
109002962  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
108984216  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
108983912  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
109013864  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
109007069  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
108991233  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like isoform X1 [KO:K00850] [EC:2.7.1.11]
109007871  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
109009465  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
109003634  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
108998278  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
108998886  ATP-dependent 6-phosphofructokinase 4, chloroplastic [KO:K00850] [EC:2.7.1.11]
109003738  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
109010220  ATP-dependent 6-phosphofructokinase 3-like isoform X1 [KO:K00850] [EC:2.7.1.11]
108997636  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
109000525  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [KO:K00895] [EC:2.7.1.90]
109002812  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
109007722  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
jre00010  Glycolysis / Gluconeogenesis
jre00040  Pentose and glucuronate interconversions
jre00052  Galactose metabolism
jre00230  Purine metabolism
jre00240  Pyrimidine metabolism
jre00340  Histidine metabolism
jre00630  Glyoxylate and dicarboxylate metabolism
jre00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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