KEGG   PATHWAY: jri00630
Entry
jri00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Janthinobacterium rivuli
Class
Metabolism; Carbohydrate metabolism
Pathway map
jri00630  Glyoxylate and dicarboxylate metabolism
jri00630

Module
jri_M00012  Glyoxylate cycle [PATH:jri00630]
jri_M00621  Glycine cleavage system [PATH:jri00630]
Other DBs
GO: 0046487 0043648
Organism
Janthinobacterium rivuli [GN:jri]
Gene
P9875_06900  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
P9875_06850  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
P9875_17850  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
P9875_22150  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P9875_15940  citrate synthase [KO:K01647] [EC:2.3.3.1]
P9875_22115  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
P9875_22165  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
P9875_00790  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
P9875_02100  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
P9875_16605  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
P9875_02105  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
P9875_10315  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
P9875_05305  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
P9875_05310  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
P9875_05315  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
P9875_04940  catalase [KO:K03781] [EC:1.11.1.6]
P9875_15735  catalase [KO:K03781] [EC:1.11.1.6]
P9875_24960  catalase [KO:K03781] [EC:1.11.1.6]
P9875_01015  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
P9875_18330  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
P9875_19685  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
P9875_04525  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
P9875_24025  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
P9875_27480  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
P9875_09410  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
P9875_13830  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
P9875_13840  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
P9875_00485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P9875_22080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P9875_24555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P9875_13835  gcvH; glycine cleavage system protein GcvH [KO:K02437]
P9875_10340  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
P9875_10730  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
P9875_28475  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
P9875_09985  glycerate kinase [KO:K11529] [EC:2.7.1.165]
P9875_28510  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
P9875_01775  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
P9875_23535  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
P9875_20325  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
P9875_20320  fdxH; formate dehydrogenase subunit beta [KO:K00124]
P9875_20315  formate dehydrogenase subunit gamma [KO:K00127]
P9875_10525  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
P9875_26940  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
jri00010  Glycolysis / Gluconeogenesis
jri00020  Citrate cycle (TCA cycle)
jri00030  Pentose phosphate pathway
jri00053  Ascorbate and aldarate metabolism
jri00071  Fatty acid degradation
jri00230  Purine metabolism
jri00250  Alanine, aspartate and glutamate metabolism
jri00260  Glycine, serine and threonine metabolism
jri00620  Pyruvate metabolism
jri00710  Carbon fixation by Calvin cycle
jri00750  Vitamin B6 metabolism
jri00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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