KEGG   PATHWAY: kpf00970
Entry
kpf00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Kosmotoga pacifica
Class
Genetic Information Processing; Translation
Pathway map
kpf00970  Aminoacyl-tRNA biosynthesis
kpf00970

Organism
Kosmotoga pacifica [GN:kpf]
Gene
IX53_00240  tRNA-Ala [KO:K14218]
IX53_02610  tRNA-Ala [KO:K14218]
IX53_03095  tRNA-Ala [KO:K14218]
IX53_03895  tRNA-Arg [KO:K14219]
IX53_03715  tRNA-Arg [KO:K14219]
IX53_07055  tRNA-Arg [KO:K14219]
IX53_10080  tRNA-Arg [KO:K14219]
IX53_10070  tRNA-Arg [KO:K14219]
IX53_02740  tRNA-Asn [KO:K14220]
IX53_04830  tRNA-Asp [KO:K14221]
IX53_05060  tRNA-Cys [KO:K14222]
IX53_05030  tRNA-Gln [KO:K14223]
IX53_07110  tRNA-Gln [KO:K14223]
IX53_00210  tRNA-Glu [KO:K14224]
IX53_00520  tRNA-Glu [KO:K14224]
IX53_00470  tRNA-Gly [KO:K14225]
IX53_02165  tRNA-Gly [KO:K14225]
IX53_10065  tRNA-Gly [KO:K14225]
IX53_10075  tRNA-His [KO:K14226]
IX53_02605  tRNA-Ile [KO:K14227]
IX53_06570  tRNA-Leu [KO:K14228]
IX53_01575  tRNA-Leu [KO:K14228]
IX53_00475  tRNA-Leu [KO:K14228]
IX53_05015  tRNA-Leu [KO:K14228]
IX53_02485  tRNA-Leu [KO:K14228]
IX53_04085  tRNA-Lys [KO:K14229]
IX53_00480  tRNA-Lys [KO:K14229]
IX53_06565  tRNA-Met [KO:K14230]
IX53_06560  tRNA-Met [KO:K14230]
IX53_03735  tRNA-Met [KO:K14230]
IX53_00220  tRNA-Phe [KO:K14231]
IX53_06865  tRNA-Pro [KO:K14232]
IX53_01615  tRNA-Pro [KO:K14232]
IX53_10060  tRNA-Pro [KO:K14232]
IX53_03985  tRNA-Ser [KO:K14233]
IX53_07060  tRNA-Ser [KO:K14233]
IX53_00255  tRNA-Ser [KO:K14233]
IX53_10095  tRNA-Ser [KO:K14233]
IX53_09030  tRNA-Thr [KO:K14234]
IX53_02990  tRNA-Thr [KO:K14234]
IX53_03070  tRNA-Thr [KO:K14234]
IX53_02005  tRNA-Trp [KO:K14235]
IX53_09035  tRNA-Tyr [KO:K14236]
IX53_03435  tRNA-Val [KO:K14237]
IX53_07790  tRNA-Val [KO:K14237]
IX53_00215  tRNA-Val [KO:K14237]
IX53_09450  glutamyl-tRNA synthetase [KO:K09698] [EC:6.1.1.24]
IX53_04655  glutamyl-tRNA synthetase [KO:K09698] [EC:6.1.1.24]
IX53_09875  gatA; glutamyl-tRNA amidotransferase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
IX53_09880  glutamyl-tRNA amidotransferase [KO:K02434] [EC:6.3.5.6 6.3.5.7]
IX53_08650  glutamyl amidotransferase [KO:K02435] [EC:6.3.5.6 6.3.5.7]
IX53_03130  alanyl-tRNA synthetase [KO:K01872] [EC:6.1.1.7]
IX53_03335  hypothetical protein [KO:K01872] [EC:6.1.1.7]
IX53_01890  aspartyl-tRNA synthetase [KO:K01876] [EC:6.1.1.12]
IX53_05630  tRNA synthetase class II (D K and N) [KO:K01893] [EC:6.1.1.22]
IX53_01880  asnC; asparagine--tRNA ligase [KO:K01893] [EC:6.1.1.22]
IX53_01530  glycyl-tRNA synthetase subunit alpha [KO:K01878] [EC:6.1.1.14]
IX53_01535  glycyl-tRNA synthetase subunit beta [KO:K01879] [EC:6.1.1.14]
IX53_01430  threonyl-tRNA synthetase [KO:K01868] [EC:6.1.1.3]
IX53_07580  seryl-tRNA synthetase [KO:K01875] [EC:6.1.1.11]
IX53_04660  cysteinyl-tRNA synthetase [KO:K01883] [EC:6.1.1.16]
IX53_00085  methionyl-tRNA synthetase [KO:K01874] [EC:6.1.1.10]
IX53_05005  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
IX53_02530  valyl-tRNA synthetase [KO:K01873] [EC:6.1.1.9]
IX53_02185  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
IX53_00055  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
IX53_02150  lysyl-tRNA synthetase [KO:K04567] [EC:6.1.1.6]
IX53_04165  arginyl-tRNA synthetase [KO:K01887] [EC:6.1.1.19]
IX53_02195  prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
IX53_07130  histidyl-tRNA synthetase [KO:K01892] [EC:6.1.1.21]
IX53_10245  pheS; phenylalanine--tRNA ligase [KO:K01889] [EC:6.1.1.20]
IX53_10240  phenylalanyl-tRNA synthetase subunit beta [KO:K01890] [EC:6.1.1.20]
IX53_03385  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
IX53_08190  tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
kpf00250  Alanine, aspartate and glutamate metabolism
kpf00260  Glycine, serine and threonine metabolism
kpf00270  Cysteine and methionine metabolism
kpf00290  Valine, leucine and isoleucine biosynthesis
kpf00300  Lysine biosynthesis
kpf00330  Arginine and proline metabolism
kpf00340  Histidine metabolism
kpf00380  Tryptophan metabolism
kpf00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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