KEGG   PATHWAY: kpj00030
Entry
kpj00030                    Pathway                                
Name
Pentose phosphate pathway - Klebsiella pneumoniae JM45
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpj00030  Pentose phosphate pathway
kpj00030

Module
kpj_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:kpj00030]
kpj_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:kpj00030]
kpj_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:kpj00030]
kpj_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:kpj00030]
kpj_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:kpj00030]
kpj_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:kpj00030]
kpj_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:kpj00030]
Other DBs
GO: 0006098
Organism
Klebsiella pneumoniae JM45 [GN:kpj]
Gene
N559_4888  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
N559_1893  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
N559_3556  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
N559_4655  putative isomerase [KO:K07404] [EC:3.1.1.31]
N559_1763  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
N559_0397  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
N559_1455  transketolase [KO:K00615] [EC:2.2.1.1]
N559_0880  transketolase [KO:K00615] [EC:2.2.1.1]
N559_3506  putative transketolase [KO:K00615] [EC:2.2.1.1]
N559_3726  putative transketolase C-terminal subunit [KO:K00615] [EC:2.2.1.1]
N559_3727  Transketolase, thiamine diphosphate binding domain protein [KO:K00615] [EC:2.2.1.1]
N559_1456  transaldolase [KO:K00616] [EC:2.2.1.2]
N559_4424  transaldolase B [KO:K00616] [EC:2.2.1.2]
N559_0888  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
N559_2602  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
N559_4453  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
N559_2575  carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
N559_5121  ribokinase [KO:K00852] [EC:2.7.1.15]
N559_2605  putative ribokinase [KO:K00852] [EC:2.7.1.15]
N559_4451  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
N559_3618  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
N559_4802  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
N559_2039  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
N559_1894  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
N559_1895  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
N559_4287  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
N559_2208  gluconate 2-dehydrogenase, flavoprotein subunit [KO:K06151] [EC:1.1.99.3]
N559_2207  gluconate 2-dehydrogenase subunit gamma [KO:K06152] [EC:1.1.99.3]
N559_0235  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
N559_0353  gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
N559_0237  putative kinase [KO:K00874] [EC:2.7.1.45]
N559_0277  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
N559_3021  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
N559_1710  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
N559_4062  putative type II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
N559_0883  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
N559_5084  putative ketose-bisphosphate aldolase, class-II [KO:K01624] [EC:4.1.2.13]
N559_4671  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
N559_0145  fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
N559_5056  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
N559_5087  Phosphofructokinase [KO:K00850] [EC:2.7.1.11]
N559_2099  6-phosphofructokinase 2 [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
kpj00010  Glycolysis / Gluconeogenesis
kpj00040  Pentose and glucuronate interconversions
kpj00052  Galactose metabolism
kpj00230  Purine metabolism
kpj00240  Pyrimidine metabolism
kpj00340  Histidine metabolism
kpj00630  Glyoxylate and dicarboxylate metabolism
kpj00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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