KEGG   PATHWAY: lacy00030
Entry
lacy00030                   Pathway                                
Name
Pentose phosphate pathway - Lachnoclostridium sp. YL32
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lacy00030  Pentose phosphate pathway
lacy00030

Module
lacy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lacy00030]
lacy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lacy00030]
lacy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lacy00030]
lacy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lacy00030]
lacy_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:lacy00030]
lacy_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:lacy00030]
Other DBs
GO: 0006098
Organism
Lachnoclostridium sp. YL32 [GN:lacy]
Gene
A4V08_14990  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
A4V08_13995  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
A4V08_18985  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
A4V08_13985  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
A4V08_13990  NADP-dependent 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
A4V08_02570  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
A4V08_33465  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
A4V08_06590  ribulose phosphate epimerase [KO:K01783] [EC:5.1.3.1]
A4V08_28595  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_28600  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_04275  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_11800  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_09110  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_19605  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_19610  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_21465  hypothetical protein [KO:K00615] [EC:2.2.1.1]
A4V08_21475  alpha-ketoacid dehydrogenase subunit beta [KO:K00615] [EC:2.2.1.1]
A4V08_24915  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_24920  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_18865  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_18870  transketolase [KO:K00615] [EC:2.2.1.1]
A4V08_04280  hypothetical protein [KO:K00615] [EC:2.2.1.1]
A4V08_18725  fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
A4V08_18995  ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
A4V08_04225  ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
A4V08_22370  ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
A4V08_33490  6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
A4V08_14470  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
A4V08_23610  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
A4V08_25910  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
A4V08_32900  ribokinase [KO:K00852] [EC:2.7.1.15]
A4V08_14465  ribokinase [KO:K00852] [EC:2.7.1.15]
A4V08_18715  ribokinase [KO:K00852] [EC:2.7.1.15]
A4V08_25905  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
A4V08_21280  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
A4V08_21515  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
A4V08_34590  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
A4V08_11730  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
A4V08_04880  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
A4V08_09285  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
A4V08_04875  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
A4V08_04870  sugar kinase [KO:K00874] [EC:2.7.1.45]
A4V08_06010  hypothetical protein [KO:K03738] [EC:1.2.7.5]
A4V08_33435  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
A4V08_13005  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_05985  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_03065  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_16510  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_20965  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
A4V08_19530  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_13860  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_21585  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A4V08_23590  iron ABC transporter substrate-binding protein [KO:K01624] [EC:4.1.2.13]
A4V08_23920  fructose-bisphosphatase class III [KO:K04041] [EC:3.1.3.11]
A4V08_01740  fructose-bisphosphatase class III [KO:K04041] [EC:3.1.3.11]
A4V08_04110  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
A4V08_33810  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_15790  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_22650  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_33840  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_21590  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_08700  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
A4V08_22360  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lacy00010  Glycolysis / Gluconeogenesis
lacy00040  Pentose and glucuronate interconversions
lacy00052  Galactose metabolism
lacy00230  Purine metabolism
lacy00240  Pyrimidine metabolism
lacy00340  Histidine metabolism
lacy00630  Glyoxylate and dicarboxylate metabolism
lacy00750  Vitamin B6 metabolism
KO pathway
ko00030   
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