KEGG   PATHWAY: lagr00630
Entry
lagr00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lysinibacillus agricola
Class
Metabolism; Carbohydrate metabolism
Pathway map
lagr00630  Glyoxylate and dicarboxylate metabolism
lagr00630

Module
lagr_M00012  Glyoxylate cycle [PATH:lagr00630]
lagr_M00621  Glycine cleavage system [PATH:lagr00630]
Other DBs
GO: 0046487 0043648
Organism
Lysinibacillus agricola [GN:lagr]
Gene
FJQ98_00650  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
FJQ98_21725  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
FJQ98_21895  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FJQ98_25370  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
FJQ98_00655  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
FJQ98_09140  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJQ98_21585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJQ98_13320  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
FJQ98_21595  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
FJQ98_13995  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FJQ98_03430  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FJQ98_07025  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FJQ98_21580  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
FJQ98_17900  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
FJQ98_17895  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
FJQ98_17930  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FJQ98_17935  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FJQ98_01085  catalase [KO:K03781] [EC:1.11.1.6]
FJQ98_04780  catalase [KO:K03781] [EC:1.11.1.6]
FJQ98_02185  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
FJQ98_06965  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FJQ98_07350  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FJQ98_08780  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
FJQ98_24380  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
FJQ98_06755  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FJQ98_07245  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FJQ98_03580  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FJQ98_23015  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FJQ98_18700  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
FJQ98_18695  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
FJQ98_18705  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FJQ98_04800  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ98_05215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ98_12510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ98_17960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ98_26130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJQ98_01010  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
FJQ98_05425  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FJQ98_09645  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FJQ98_07345  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FJQ98_10060  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FJQ98_25095  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FJQ98_13905  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
FJQ98_20975  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FJQ98_00955  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lagr00010  Glycolysis / Gluconeogenesis
lagr00020  Citrate cycle (TCA cycle)
lagr00030  Pentose phosphate pathway
lagr00053  Ascorbate and aldarate metabolism
lagr00071  Fatty acid degradation
lagr00230  Purine metabolism
lagr00250  Alanine, aspartate and glutamate metabolism
lagr00260  Glycine, serine and threonine metabolism
lagr00620  Pyruvate metabolism
lagr00710  Carbon fixation by Calvin cycle
lagr00750  Vitamin B6 metabolism
lagr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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