KEGG   PATHWAY: lak00630
Entry
lak00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lingula anatina
Class
Metabolism; Carbohydrate metabolism
Pathway map
lak00630  Glyoxylate and dicarboxylate metabolism
lak00630

Module
lak_M00621  Glycine cleavage system [PATH:lak00630]
lak_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lak00630]
Other DBs
GO: 0046487 0043648
Organism
Lingula anatina [GN:lak]
Gene
106157038  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
106172141  acetyl-coenzyme A synthetase, cytoplasmic [KO:K01895] [EC:6.2.1.1]
106154959  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106159255  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
106165438  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
106173267  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
106174228  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
106153726  acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
106159155  acetyl-CoA acetyltransferase, cytosolic-like [KO:K00626] [EC:2.3.1.9]
106165135  acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
106180158  methylmalonyl-CoA epimerase, mitochondrial isoform X1 [KO:K05606] [EC:5.1.99.1]
106167649  propionyl-CoA carboxylase alpha chain, mitochondrial [KO:K01965] [EC:6.4.1.3]
106162237  propionyl-CoA carboxylase alpha chain, mitochondrial-like isoform X1 [KO:K01965] [EC:6.4.1.3]
106177186  propionyl-CoA carboxylase beta chain, mitochondrial-like [KO:K01966] [EC:6.4.1.3 2.1.3.15]
106156449  methylmalonyl-CoA mutase, mitochondrial [KO:K01847] [EC:5.4.99.2]
106151924  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
106176309  hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
106176310  hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
106159960  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
106165187  hydroxyacid oxidase 2-like [KO:K11517] [EC:1.1.3.15]
106159239  hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
106167335  hydroxyacid oxidase 2-like [KO:K11517] [EC:1.1.3.15]
106167336  hydroxyacid oxidase 2-like [KO:K11517] [EC:1.1.3.15]
106159332  hydroxyacid oxidase 2-like [KO:K11517] [EC:1.1.3.15]
106159333  hydroxyacid oxidase 1-like [KO:K11517] [EC:1.1.3.15]
106178974  hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
106151897  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
106176224  LOW QUALITY PROTEIN: catalase-like [KO:K03781] [EC:1.11.1.6]
106172632  glyoxylate reductase/hydroxypyruvate reductase [KO:K00049] [EC:1.1.1.79 1.1.1.81]
106162927  glyoxylate reductase/hydroxypyruvate reductase [KO:K00049] [EC:1.1.1.79 1.1.1.81]
106181573  glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
106167244  glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
106178363  serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
106162811  serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
106175784  glutamine synthetase isoform X1 [KO:K01915] [EC:6.3.1.2]
106152198  serine hydroxymethyltransferase, cytosolic-like [KO:K00600] [EC:2.1.2.1]
106155097  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
106168499  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
106164590  LOW QUALITY PROTEIN: glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
106166562  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
106181444  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
106179947  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
106152400  uncharacterized protein LOC106152400 [KO:K02437]
106159439  uncharacterized protein LOC106159439 [KO:K02437]
106171587  putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
106151329  glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
106170963  4-hydroxy-2-oxoglutarate aldolase, mitochondrial [KO:K18123] [EC:4.1.3.16]
106180725  kynurenine formamidase isoform X1 [KO:K01432] [EC:3.5.1.9]
106180748  kynurenine formamidase-like [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lak00010  Glycolysis / Gluconeogenesis
lak00020  Citrate cycle (TCA cycle)
lak00030  Pentose phosphate pathway
lak00053  Ascorbate and aldarate metabolism
lak00071  Fatty acid degradation
lak00230  Purine metabolism
lak00250  Alanine, aspartate and glutamate metabolism
lak00260  Glycine, serine and threonine metabolism
lak00620  Pyruvate metabolism
lak00750  Vitamin B6 metabolism
lak00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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