KEGG   PATHWAY: lav03008
Entry
lav03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Loxodonta africana (African savanna elephant)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
lav03008  Ribosome biogenesis in eukaryotes
lav03008

Organism
Loxodonta africana (African savanna elephant) [GN:lav]
Gene
100671712  CSNK2B; casein kinase II subunit beta isoform X1 [KO:K03115]
100653935  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
100666770  CSNK2A2; LOW QUALITY PROTEIN: casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
100676409  NOL6; nucleolar protein 6 isoform X2 [KO:K14544]
100655110  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
100660777  WDR43; LOW QUALITY PROTEIN: WD repeat-containing protein 43 [KO:K14546]
100660800  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
100660851  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
100666076  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
100670971  WDR75; WD repeat-containing protein 75 [KO:K14552]
100664385  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
100671048  WDR36; WD repeat-containing protein 36 [KO:K14554]
100664290  TBL3; transducin beta-like protein 3 isoform X1 [KO:K14555]
100663799  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
100672920  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
100673319  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
100677023  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
100656600  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
100669409  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1 [KO:K14561]
100666321  TCOF1; treacle protein isoform X1 [KO:K14562]
100654843  LOW QUALITY PROTEIN: rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
100672949  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
100669477  NOP56; nucleolar protein 56 isoform X1 [KO:K14564]
100658651  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
100655775  SNU13; NHP2-like protein 1 [KO:K12845]
100671610  DKC1; H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
100675054  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
100669280  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
100654445  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
100673660  FCF1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
100655377  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
111747557  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
100671549  DROSHA; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
100677554  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
100661377  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
100661831  NAT10; RNA cytidine acetyltransferase isoform X2 [KO:K14521] [EC:2.3.1.-]
100676934  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X2 [KO:K11108]
100671839  POP1; ribonucleases P/MRP protein subunit POP1 isoform X2 [KO:K01164] [EC:3.1.26.5]
100673768  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
100660020  POP4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
100674092  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
100673361  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
100655177  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
100676567  POP7; ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
100657632  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
100670268  RPP40; ribonuclease P protein subunit p40 isoform X2 [KO:K14530] [EC:3.1.26.5]
100669699  REXO5; RNA exonuclease 5 isoform X2 [KO:K14570] [EC:3.1.-.-]
100665368  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
100666673  REXO2; oligoribonuclease, mitochondrial isoform X2 [KO:K13288] [EC:3.1.-.-]
100661562  XRN1; 5'-3' exoribonuclease 1 isoform X2 [KO:K12618] [EC:3.1.13.-]
100654986  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
100659818  GTPBP4; nucleolar GTP-binding protein 1 isoform X1 [KO:K06943]
100654614  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
100662841  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
100677783  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
100675469  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
100677513  MDN1; midasin isoform X1 [KO:K14572]
100664161  RBM28; RNA-binding protein 28 isoform X1 [KO:K14573]
100662686  NOB1; RNA-binding protein NOB1 [KO:K11883]
100655400  RAN; GTP-binding nuclear protein Ran [KO:K07936]
100669230  LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran-like [KO:K07936]
100664966  XPO1; exportin-1 isoform X2 [KO:K14290]
100673248  NMD3; 60S ribosomal export protein NMD3 isoform X2 [KO:K07562]
100675234  NXF1; nuclear RNA export factor 1 [KO:K14284]
100653805  nuclear RNA export factor 2-like [KO:K14284]
100671807  nuclear RNA export factor 1-like [KO:K14284]
100672101  uncharacterized protein LOC100672101 [KO:K14284]
100674394  nuclear RNA export factor 3-like [KO:K14284]
100676100  nuclear RNA export factor 3-like [KO:K14284]
100676665  LOW QUALITY PROTEIN: nuclear RNA export factor 3-like [KO:K14284]
100677515  LOW QUALITY PROTEIN: nuclear RNA export factor 1-like [KO:K14284]
100654088  nuclear RNA export factor 3-like [KO:K14284]
100676524  nuclear RNA export factor 2-like [KO:K14284]
100661632  NXT1; NTF2-related export protein 1 [KO:K14285]
100670537  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
100667881  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
100671024  SBDS; ribosome maturation protein SBDS [KO:K14574]
100655086  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
100660979  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
100657822  SPATA5; spermatogenesis-associated protein 5 [KO:K14575]
100656392  AK6; adenylate kinase isoenzyme 6 isoform X2 [KO:K18532] [EC:2.7.4.3]
100656717  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
100654182  RIOK2; serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
111749188  5S ribosomal RNA [KO:K01981]
111750217  5S ribosomal RNA [KO:K01981]
111751801  small nucleolar RNA U3 [KO:K14483]
111751803  small nucleolar RNA U3 [KO:K14483]
111751802  small nucleolar RNA U3 [KO:K14483]
111751804  small nucleolar RNA U3 [KO:K14483]
111751591  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
lav03010  Ribosome
KO pathway
ko03008   
LinkDB

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