KEGG   PATHWAY: lbd04137
Entry
lbd04137                    Pathway                                
Name
Mitophagy - animal - Leptopilina boulardi
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
lbd04137  Mitophagy - animal
lbd04137

Other DBs
GO: 0000422
Organism
Leptopilina boulardi [GN:lbd]
Gene
127277406  probable serine/threonine-protein kinase DDB_G0282963 isoform X1 [KO:K17985]
127289675  serine/threonine-protein kinase Pink1, mitochondrial [KO:K05688] [EC:2.7.11.1]
127290297  mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
127285059  mitochondrial import receptor subunit TOM40 homolog 1-like [KO:K11518]
127281783  mitochondrial import receptor subunit TOM40 homolog 1-like [KO:K11518]
127289483  mitochondrial import receptor subunit TOM20 homolog B [KO:K17770]
127287262  mitochondrial import receptor subunit TOM70 [KO:K17768]
127277074  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
127280823  E3 ubiquitin-protein ligase MARCHF5-like [KO:K10660] [EC:2.3.2.27]
127287647  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
127291268  E3 ubiquitin-protein ligase AMFR-like isoform X1 [KO:K10636] [EC:2.3.2.36]
127287244  mitochondrial E3 ubiquitin protein ligase 1-like [KO:K15688] [EC:2.3.2.27]
127278766  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
127288114  E3 ubiquitin-protein ligase SIAH1-like [KO:K04506] [EC:2.3.2.27]
127285807  E3 ubiquitin-protein ligase arih1 [KO:K11968] [EC:2.3.2.31]
127283481  transmembrane GTPase Marf isoform X1 [KO:K06030] [EC:3.6.5.-]
127283737  mitochondrial Rho GTPase isoform X1 [KO:K07870] [EC:3.6.5.-]
127278362  ubiquitin-60S ribosomal protein L40 [KO:K02927]
127286522  ubiquitin-40S ribosomal protein S27a [KO:K02977]
127280667  polyubiquitin-A isoform X1 [KO:K08770]
127290016  polyubiquitin isoform X1 [KO:K08770]
127288146  sequestosome-1 [KO:K14381]
127282061  inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K05410] [EC:2.7.11.10]
127278994  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
127288656  microtubule-associated proteins 1A/1B light chain 3A-like [KO:K10435]
127291544  beclin-1-like protein [KO:K08334]
127283341  serine/threonine-protein phosphatase Pgam5, mitochondrial-like [KO:K15637] [EC:3.1.3.16]
127291465  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
127277314  casein kinase II subunit beta [KO:K03115]
127283518  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
127282571  FUN14 domain-containing protein 1 isoform X1 [KO:K17986]
127278619  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
127290570  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
127282656  sorting and assembly machinery component 50 homolog B [KO:K07277]
127289742  prohibitin-2 isoform X1 [KO:K17081]
127286022  metaxin-1 isoform X1 [KO:K17776]
127287174  metaxin-2-like isoform X1 [KO:K17776]
127277496  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
127277244  stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
127290486  transcription factor Jun [KO:K04448]
127288652  ras-like protein 1 [KO:K07827]
127277969  ras-related protein M-Ras-like [KO:K07831]
127281795  forkhead box protein O-like [KO:K09408]
127289949  microphthalmia-associated transcription factor [KO:K09455]
127287343  rab5 GDP/GTP exchange factor [KO:K20131]
127284016  ras-related protein Rab-5C [KO:K07887]
127284224  vacuolar fusion protein MON1 homolog A [KO:K20195]
127289044  vacuolar fusion protein CCZ1 homolog [KO:K27045]
127285517  ras-related protein Rab-7a [KO:K07897]
127280940  TBC1 domain family member 15 [KO:K20168]
127289088  mitochondrial fission 1 protein [KO:K17969]
127290810  autophagy-related protein 9A isoform X1 [KO:K17907]
127282004  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
127288165  transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
lbd04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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