KEGG   PATHWAY: ko04137
Entry
ko04137                     Pathway                                
Name
Mitophagy - animal
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
ko04137  Mitophagy - animal
ko04137

Other DBs
GO: 0000422
Orthology
K02833  HRAS; GTPase HRas
K02927  RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e
K02977  RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae
K03097  CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
K03115  CSNK2B; casein kinase II subunit beta
K03173  TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
K03237  EIF2S1; translation initiation factor 2 subunit 1
K04374  ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4
K04440  JNK; mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase) [EC:2.7.11.24]
K04448  JUN; transcription factor AP-1
K04451  TP53, P53; tumor protein p53
K04506  SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]
K04551  UBB; ubiquitin B
K04556  PARK2; parkin [EC:2.3.2.31]
K04570  BCL2L1, bcl-xL; Bcl-2-like 1 (apoptosis regulator Bcl-X)
K04678  SMURF; E3 ubiquitin ligase SMURF1/2 [EC:2.3.2.26]
K04684  SP1; transcription factor Sp1
K04735  RELA; transcription factor p65
K05410  TBK1; TANK-binding kinase 1 [EC:2.7.11.10]
K05688  PINK1; PTEN induced putative kinase 1 [EC:2.7.11.1]
K05704  SRC; tyrosine-protein kinase Src [EC:2.7.10.2]
K06030  MFN2, FZO1; mitofusin 2 [EC:3.6.5.-]
K07277  SAM50, TOB55, bamA; outer membrane protein insertion porin family
K07827  KRAS, KRAS2; GTPase KRas
K07828  NRAS; GTPase NRas
K07829  RRAS; Ras-related protein R-Ras
K07830  RRAS2, TC21; Ras-related protein R-Ras2
K07831  MRAS; Ras-related protein M-Ras
K07870  RHOT1, ARHT1; mitochondrial Rho GTPase 1 [EC:3.6.5.-]
K07871  RHOT2, ARHT2; mitochondrial Rho GTPase 2 [EC:3.6.5.-]
K07887  RAB5A; Ras-related protein Rab-5A
K07888  RAB5B; Ras-related protein Rab-5B
K07889  RAB5C; Ras-related protein Rab-5C
K07897  RAB7A; Ras-related protein Rab-7A
K07898  RAB7B; Ras-related protein Rab-7B
K08268  HIF1A; hypoxia-inducible factor 1 alpha
K08334  BECN, VPS30, ATG6; beclin
K08341  GABARAP, ATG8, LC3; GABA(A) receptor-associated protein
K08770  UBC; ubiquitin C
K08860  EIF2AK3, PERK; eukaryotic translation initiation factor 2-alpha kinase 3 [EC:2.7.11.1]
K09105  TFE3; transcription factor E3
K09408  FOXO3; forkhead box protein O3
K09455  MITF; microphthalmia-associated transcription factor
K09574  FKBP8; FK506-binding protein 8 [EC:5.2.1.8]
K10435  MAP1LC; microtubule-associated protein 1 light chain
K10592  HUWE1, MULE, ARF-BP1, TOM1; E3 ubiquitin-protein ligase HUWE1 [EC:2.3.2.26]
K10636  AMFR, GP78; E3 ubiquitin-protein ligase AMFR [EC:2.3.2.36]
K10660  MARCH5; E3 ubiquitin-protein ligase MARCH5 [EC:2.3.2.27]
K11518  TOM40; mitochondrial import receptor subunit TOM40
K11839  USP8, UBP5; ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12]
K11851  USP30; ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12]
K11968  ARIH1; ariadne-1 [EC:2.3.2.31]
K12653  NLRX1; NLR family member X1
K13525  VCP, CDC48; transitional endoplasmic reticulum ATPase
K14381  SQSTM1; sequestosome 1
K15464  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3
K15465  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like
K15485  BCL2L13, BCL-RAMBO; Bcl-2-like protein 13
K15590  TFEB; transcription factor EB
K15637  PGAM5; serine/threonine-protein phosphatase PGAM5 [EC:3.1.3.16]
K15688  MUL1; E3 ubiquitin-protein ligase MUL1 [EC:2.3.2.27]
K17079  OPA1; optic atrophy protein 1 [EC:3.6.5.5]
K17081  PHB2; prohibitin 2
K17454  E2F1; transcription factor E2F1
K17768  TOM70; mitochondrial import receptor subunit TOM70
K17770  TOM20; mitochondrial import receptor subunit TOM20
K17771  TOM7; mitochondrial import receptor subunit TOM7
K17776  MTX; metaxin
K17907  ATG9; autophagy-related protein 9
K17969  FIS1, TTC11, MDV2; mitochondrial fission 1 protein
K17985  AMBRA1; activating molecule in BECN1-regulated autophagy protein 1
K17986  FUNDC1; FUN14 domain-containing protein 1
K17987  NBR1; next to BRCA1 gene 1 protein
K19945  TBC1D17; TBC1 domain family member 17
K19946  OPTN, FIP2; optineurin
K20131  RABGEF1; Rab5 GDP/GTP exchange factor
K20168  TBC1D15; TBC1 domain family member 15
K20195  MON1; vacuolar fusion protein MON1
K21343  USP15; ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12]
K21347  TAX1BP1; Tax1-binding protein 1
K21348  CALCOCO2, NDP52; calcium-binding and coiled-coil domain-containing protein 2
K21356  MFN1; mitofusin 1 [EC:3.6.5.-]
K21357  ULK1; serine/threonine-protein kinase ULK1 [EC:2.7.11.1]
K21361  CITED2; Cbp/p300-interacting transactivator 2
K27045  CCZ1; vacuolar fusion protein CCZ1, animal type
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
ko04140  Autophagy - animal
ko04210  Apoptosis

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