KEGG   PATHWAY: lbm00970
Entry
lbm00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Bombilactobacillus bombi
Class
Genetic Information Processing; Translation
Pathway map
lbm00970  Aminoacyl-tRNA biosynthesis
lbm00970

Organism
Bombilactobacillus bombi [GN:lbm]
Gene
DS830_08705  tRNA-Ala [KO:K14218]
DS830_01385  tRNA-Ala [KO:K14218]
DS830_01570  tRNA-Ala [KO:K14218]
DS830_04480  tRNA-Arg [KO:K14219]
DS830_05135  tRNA-Arg [KO:K14219]
DS830_00465  tRNA-Arg [KO:K14219]
DS830_01430  tRNA-Arg [KO:K14219]
DS830_02065  tRNA-Arg [KO:K14219]
DS830_01585  tRNA-Asn [KO:K14220]
DS830_05390  tRNA-Asn [KO:K14220]
DS830_01455  tRNA-Asp [KO:K14221]
DS830_01490  tRNA-Asp [KO:K14221]
DS830_01520  tRNA-Cys [KO:K14222]
DS830_01515  tRNA-Gln [KO:K14223]
DS830_05360  tRNA-Gln [KO:K14223]
DS830_04145  tRNA-Gln [KO:K14223]
DS830_01595  tRNA-Glu [KO:K14224]
DS830_01605  tRNA-Glu [KO:K14224]
DS830_04120  tRNA-Glu [KO:K14224]
DS830_00455  tRNA-Gly [KO:K14225]
DS830_01720  tRNA-Gly [KO:K14225]
DS830_00470  tRNA-Gly [KO:K14225]
DS830_01420  tRNA-Gly [KO:K14225]
DS830_01465  tRNA-Gly [KO:K14225]
DS830_01510  tRNA-His [KO:K14226]
DS830_01380  tRNA-Ile [KO:K14227]
DS830_01470  tRNA-Ile [KO:K14227]
DS830_01565  tRNA-Ile [KO:K14227]
DS830_00460  tRNA-Leu [KO:K14228]
DS830_01425  tRNA-Leu [KO:K14228]
DS830_01410  tRNA-Leu [KO:K14228]
DS830_01525  tRNA-Leu [KO:K14228]
DS830_04515  tRNA-Leu [KO:K14228]
DS830_05320  tRNA-Leu [KO:K14228]
DS830_07325  tRNA-Lys [KO:K14229]
DS830_00450  tRNA-Lys [KO:K14229]
DS830_01405  tRNA-Lys [KO:K14229]
DS830_01440  tRNA-Met [KO:K14230]
DS830_01445  tRNA-Met [KO:K14230]
DS830_01450  tRNA-Met [KO:K14230]
DS830_01485  tRNA-Met [KO:K14230]
DS830_01460  tRNA-Phe [KO:K14231]
DS830_01495  tRNA-Phe [KO:K14231]
DS830_01435  tRNA-Pro [KO:K14232]
DS830_00475  tRNA-Pro [KO:K14232]
DS830_01475  tRNA-Ser [KO:K14233]
DS830_01480  tRNA-Ser [KO:K14233]
DS830_01590  tRNA-Ser [KO:K14233]
DS830_02455  tRNA-Ser [KO:K14233]
DS830_00140  tRNA-Thr [KO:K14234]
DS830_01415  tRNA-Thr [KO:K14234]
DS830_05385  tRNA-Thr [KO:K14234]
DS830_01505  tRNA-Trp [KO:K14235]
DS830_01500  tRNA-Tyr [KO:K14236]
DS830_05365  tRNA-Tyr [KO:K14236]
DS830_01400  tRNA-Val [KO:K14237]
DS830_01600  tRNA-Val [KO:K14237]
DS830_01610  tRNA-Val [KO:K14237]
DS830_00815  glutamate--tRNA ligase [KO:K09698] [EC:6.1.1.24]
DS830_05270  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
DS830_05265  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
DS830_05275  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
DS830_01195  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
DS830_02620  aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
DS830_03195  asparagine--tRNA ligase [KO:K01893] [EC:6.1.1.22]
DS830_02685  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
DS830_02690  glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
DS830_01850  threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
DS830_05410  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
DS830_00820  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
DS830_00255  methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
DS830_02175  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
DS830_03935  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
DS830_01645  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
DS830_03805  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
DS830_00445  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
DS830_01730  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
DS830_02365  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
DS830_02615  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
DS830_01975  phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
DS830_01980  phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
DS830_00120  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
DS830_00180  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
lbm00250  Alanine, aspartate and glutamate metabolism
lbm00260  Glycine, serine and threonine metabolism
lbm00270  Cysteine and methionine metabolism
lbm00290  Valine, leucine and isoleucine biosynthesis
lbm00300  Lysine biosynthesis
lbm00330  Arginine and proline metabolism
lbm00380  Tryptophan metabolism
lbm00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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