KEGG   PATHWAY: lel00020
Entry
lel00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lodderomyces elongisporus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lel00020  Citrate cycle (TCA cycle)
lel00020

Module
lel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lel00020]
lel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lel00020]
lel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lel00020]
lel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lel00020]
lel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lel00020]
Other DBs
GO: 0006099
Organism
Lodderomyces elongisporus [GN:lel]
Gene
PVL30_000273  CIT1; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
PVL30_002585  ACO1; Aconitate hydratase mitochondrial [KO:K01681] [EC:4.2.1.3]
PVL30_000090  IDP2; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PVL30_000940  IDP1; Isocitrate dehydrogenase [NADP], mitochondrial precursor (Oxalosuccinate decarboxylase) [KO:K00031] [EC:1.1.1.42]
PVL30_001265  IDH2; NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
PVL30_000469  IDH1; isocitrate dehydrogenase (NAD(+)) idh1 [KO:K00030] [EC:1.1.1.41]
PVL30_002041  KGD1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PVL30_002794  KGD2; 2-oxoglutarate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
PVL30_002650  LPD1; dihydrolipoamide dehydrogenase precursor [KO:K00382] [EC:1.8.1.4]
PVL30_001407  LSC1; ligase of succinyl-coa [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PVL30_002723  LSC2; succinate--CoA ligase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PVL30_001746  SDH1_1; succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
PVL30_004481  SDH1_3; succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
PVL30_002772  SDH2; succinate dehydrogenase complex, subunit B [KO:K00235] [EC:1.3.5.1]
PVL30_000895  SDH3; cytochrome b subunit of succinate dehydrogenase, Sdh3p [KO:K00236]
PVL30_001492  SDH4; membrane anchor subunit of succinate dehydrogenase, Sdh4 [KO:K00237]
PVL30_004918  uncharacterized protein [KO:K00237]
PVL30_002614  FUM1_1; fumarase fum1 [KO:K01679] [EC:4.2.1.2]
PVL30_003800  FUM1_3; fumarase fum1 [KO:K01679] [EC:4.2.1.2]
PVL30_000455  MDH1_1; Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
PVL30_003468  MDH2; malate DEHYDROGENASE, NAD-dependent [KO:K00026] [EC:1.1.1.37]
PVL30_003921  MDH1_3; Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
PVL30_004151  PYC1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PVL30_000053  PCK1; Protein kinase C-like 1 [KO:K01610] [EC:4.1.1.49]
PVL30_004403  PDA1; alpha subunit of pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
PVL30_004159  PDB1; pyruvate dehydrogenase E1, beta subunit [KO:K00162] [EC:1.2.4.1]
PVL30_005157  LAT1; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase component (E2) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lel00010  Glycolysis / Gluconeogenesis
lel00053  Ascorbate and aldarate metabolism
lel00061  Fatty acid biosynthesis
lel00062  Fatty acid elongation
lel00071  Fatty acid degradation
lel00190  Oxidative phosphorylation
lel00220  Arginine biosynthesis
lel00250  Alanine, aspartate and glutamate metabolism
lel00280  Valine, leucine and isoleucine degradation
lel00350  Tyrosine metabolism
lel00470  D-Amino acid metabolism
lel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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