KEGG   PATHWAY: lgy00010
Entry
lgy00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Lysinibacillus varians
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lgy00010  Glycolysis / Gluconeogenesis
lgy00010

Module
lgy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:lgy00010]
lgy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lgy00010]
lgy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lgy00010]
Other DBs
GO: 0006096 0006094
Organism
Lysinibacillus varians [GN:lgy]
Gene
T479_17540  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
T479_02715  glpX; fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
T479_02700  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
T479_19245  tpiA; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
T479_19255  gapA; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
T479_17450  gapA; glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
T479_19250  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
T479_19240  phosphoglyceromutase [KO:K15633] [EC:5.4.2.12]
T479_19235  eno; enolase [KO:K01689] [EC:4.2.1.11]
T479_17535  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
T479_04155  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
T479_04160  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
T479_04165  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
T479_03765  acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
T479_04170  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
T479_14160  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
T479_05500  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
T479_05505  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
T479_10840  adhP; acetaldehyde reductase [KO:K13953] [EC:1.1.1.1]
T479_17680  alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
T479_10935  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
T479_08870  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
T479_03780  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
T479_23150  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
T479_22670  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
T479_17620  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
T479_17725  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
T479_10970  acetyl-CoA synthetase [KO:K24012] [EC:6.2.1.13]
T479_17995  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lgy00020  Citrate cycle (TCA cycle)
lgy00030  Pentose phosphate pathway
lgy00500  Starch and sucrose metabolism
lgy00620  Pyruvate metabolism
lgy00640  Propanoate metabolism
lgy00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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