KEGG   PATHWAY: lhh03030
Entry
lhh03030                    Pathway                                
Name
DNA replication - Lactobacillus helveticus H9
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lhh03030  DNA replication
lhh03030

Organism
Lactobacillus helveticus H9 [GN:lhh]
Gene
LBH_0605  DNA polymerase III alpha chain [KO:K02342] [EC:2.7.7.7]
LBH_1473  DNA polymerase III [KO:K02342] [EC:2.7.7.7]
LBH_0857  DNA-directed DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
LBH_1109  DNA polymerase subunit III [KO:K03763] [EC:2.7.7.7]
LBH_0321  DNA polymerase III, gamma/tau subunit [KO:K02343] [EC:2.7.7.7]
LBH_0327  DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
LBH_0742  DNA-directed DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
LBH_0002  DNA polymerase III Beta chain [KO:K02338] [EC:2.7.7.7]
LBH_0012  Replicative DNA helicase DnaB [KO:K02314] [EC:5.6.2.3]
LBH_1061  DNA primase [KO:K02316] [EC:2.7.7.101]
LBH_0008  Single-stranded DNA-binding protein [KO:K03111]
LBH_0106  Ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
LBH_0880  rnhB; Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
LBH_1351  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LBH_0444  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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