KEGG   PATHWAY: lih00630
Entry
lih00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Limnohabitans sp. 63ED37-2
Class
Metabolism; Carbohydrate metabolism
Pathway map
lih00630  Glyoxylate and dicarboxylate metabolism
lih00630

Module
lih_M00012  Glyoxylate cycle [PATH:lih00630]
lih_M00621  Glycine cleavage system [PATH:lih00630]
Other DBs
GO: 0046487 0043648
Organism
Limnohabitans sp. 63ED37-2 [GN:lih]
Gene
L63ED372_01514  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
L63ED372_01051  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
L63ED372_01330  acsA_3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
L63ED372_01862  acsA_4; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
L63ED372_00078  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
L63ED372_01915  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L63ED372_01922  gltA_2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
L63ED372_01912  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L63ED372_01857  bktB_2; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
L63ED372_00604  fadA_1; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
L63ED372_01389  fadA_2; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
L63ED372_03170  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
L63ED372_01993  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
L63ED372_00987  bktB_1; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
L63ED372_01992  phbB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
L63ED372_01984  accA1_2; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
L63ED372_01985  accD5; putative propionyl-CoA carboxylase beta chain 5 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
L63ED372_01987  scpA_2; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
L63ED372_02759  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
L63ED372_02869  putative FAD-linked oxidoreductase [KO:K11472] [EC:1.1.99.14]
L63ED372_02868  lutA; Lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
L63ED372_03186  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
L63ED372_01081  ghrB_2; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
L63ED372_03101  gph_3; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
L63ED372_00807  ppaX; Pyrophosphatase PpaX [KO:K01091] [EC:3.1.3.18]
L63ED372_00522  gph_1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
L63ED372_00506  cbbL; Ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
L63ED372_00507  cbbS1; Ribulose bisphosphate carboxylase small chain 1 [KO:K01602] [EC:4.1.1.39]
L63ED372_02928  Soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
L63ED372_01319  Soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
L63ED372_01616  glnA_1; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
L63ED372_02474  glnA_2; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
L63ED372_01843  3-hydroxylaminophenol mutase [KO:K01915] [EC:6.3.1.2]
L63ED372_01643  glyA2; Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
L63ED372_01298  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
L63ED372_01300  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
L63ED372_01196  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L63ED372_01242  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L63ED372_01299  gcvH; Glycine cleavage system H protein [KO:K02437]
L63ED372_02042  glxR_1; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
L63ED372_00467  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
L63ED372_01094  dmlA; D-malate dehydrogenase [decarboxylating] [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
L63ED372_00465  ttuC'; putative tartrate dehydrogenase/decarboxylase TtuC' [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
L63ED372_00912  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L63ED372_02233  fdhF_1; Formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
L63ED372_02243  fdhF_2; Formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
L63ED372_02244  nqo1; NADH-quinone oxidoreductase subunit 1 [KO:K22515] [EC:1.17.1.9]
L63ED372_02232  fdhB1; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
L63ED372_02230  fdoI; Formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
L63ED372_02081  nlhH_3; Carboxylesterase NlhH [KO:K01432] [EC:3.5.1.9]
L63ED372_01898  kynB; Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
L63ED372_02757  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lih00010  Glycolysis / Gluconeogenesis
lih00020  Citrate cycle (TCA cycle)
lih00030  Pentose phosphate pathway
lih00053  Ascorbate and aldarate metabolism
lih00071  Fatty acid degradation
lih00230  Purine metabolism
lih00250  Alanine, aspartate and glutamate metabolism
lih00260  Glycine, serine and threonine metabolism
lih00620  Pyruvate metabolism
lih00710  Carbon fixation by Calvin cycle
lih00750  Vitamin B6 metabolism
lih00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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