KEGG   PATHWAY: lsk03430
Entry
lsk03430                    Pathway                                
Name
Mismatch repair - Leptothermofonsia sichuanensis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lsk03430  Mismatch repair
lsk03430

Other DBs
GO: 0006298
Organism
Leptothermofonsia sichuanensis [GN:lsk]
Gene
J5X98_13320  mutS; DNA mismatch repair protein MutS [KO:K03555]
J5X98_04025  endonuclease MutS2 [KO:K07456]
J5X98_24445  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
J5X98_26375  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
J5X98_26470  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
J5X98_06045  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
J5X98_06050  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
J5X98_05910  DHH family phosphoesterase [KO:K07462] [EC:3.1.-.-]
J5X98_25210  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
J5X98_04695  single-stranded DNA-binding protein [KO:K03111]
J5X98_13010  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
J5X98_03405  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
J5X98_11165  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
J5X98_26650  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
J5X98_24165  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
J5X98_23000  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
J5X98_02745  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
J5X98_07935  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
J5X98_14665  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
J5X98_18425  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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