KEGG   PATHWAY: lsr03030
Entry
lsr03030                    Pathway                                
Name
DNA replication - Lonchura striata domestica (Bengalese finch)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lsr03030  DNA replication
lsr03030

Organism
Lonchura striata domestica (Bengalese finch) [GN:lsr]
Gene
110482578  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
110482142  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
110482084  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
110481404  PCNA; proliferating cell nuclear antigen [KO:K04802]
110469901  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
110467544  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
110483268  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
110467587  DNA polymerase alpha subunit B [KO:K02321]
110478840  POLA2; DNA polymerase alpha subunit B [KO:K02321]
110477060  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
110482675  PRIM2; DNA primase large subunit [KO:K02685]
110478291  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
110477862  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
110485067  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
110473858  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
110473489  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
110472209  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
110469510  DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
110472484  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
110481220  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
110473760  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
110483817  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
110480636  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
110481657  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
110484243  RPA2; replication protein A 32 kDa subunit [KO:K10739]
110474720  RPA3; replication protein A 14 kDa subunit [KO:K10740]
110472006  RFC1; replication factor C subunit 1 isoform X2 [KO:K10754]
110482093  RFC2; replication factor C subunit 2 [KO:K10755]
110477698  RFC4; replication factor C subunit 4 [KO:K10755]
110474153  RFC5; replication factor C subunit 5 [KO:K10756]
110476738  RFC3; replication factor C subunit 3 [KO:K10756]
110481622  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
110468585  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
116184684  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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