KEGG   PATHWAY: lth00020
Entry
lth00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lachancea thermotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lth00020  Citrate cycle (TCA cycle)
lth00020

Module
lth_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lth00020]
lth_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lth00020]
lth_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lth00020]
lth_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lth00020]
lth_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lth00020]
Other DBs
GO: 0006099
Organism
Lachancea thermotolerans [GN:lth]
Gene
KLTH0H12606g  KLTH0H12606p [KO:K01647] [EC:2.3.3.1]
KLTH0D03630g  KLTH0D03630p [KO:K01681] [EC:4.2.1.3]
KLTH0D14476g  KLTH0D14476p [KO:K00031] [EC:1.1.1.42]
KLTH0H12012g  KLTH0H12012p [KO:K00031] [EC:1.1.1.42]
KLTH0F15048g  KLTH0F15048p [KO:K00030] [EC:1.1.1.41]
KLTH0G10186g  KLTH0G10186p [KO:K00030] [EC:1.1.1.41]
KLTH0G09262g  KLTH0G09262p [KO:K00164] [EC:1.2.4.2]
KLTH0G12188g  KLTH0G12188p [KO:K00658] [EC:2.3.1.61]
KLTH0A02992g  KLTH0A02992p [KO:K00382] [EC:1.8.1.4]
KLTH0G02464g  KLTH0G02464p [KO:K01899] [EC:6.2.1.4 6.2.1.5]
KLTH0H00880g  KLTH0H00880p [KO:K01900] [EC:6.2.1.4 6.2.1.5]
KLTH0G07480g  KLTH0G07480p [KO:K00234] [EC:1.3.5.1]
KLTH0E05742g  KLTH0E05742p [KO:K00235] [EC:1.3.5.1]
KLTH0D04312g  KLTH0D04312p [KO:K00236]
KLTH0F08932g  KLTH0F08932p [KO:K00237]
KLTH0C11462g  KLTH0C11462p [KO:K01679] [EC:4.2.1.2]
KLTH0C01188g  KLTH0C01188p [KO:K00026] [EC:1.1.1.37]
KLTH0E09614g  KLTH0E09614p [KO:K00026] [EC:1.1.1.37]
KLTH0F18854g  KLTH0F18854p [KO:K00026] [EC:1.1.1.37]
KLTH0H06600g  KLTH0H06600p [KO:K01958] [EC:6.4.1.1]
KLTH0E00902g  KLTH0E00902p [KO:K01610] [EC:4.1.1.49]
KLTH0G14058g  KLTH0G14058p [KO:K00161] [EC:1.2.4.1]
KLTH0H06512g  KLTH0H06512p [KO:K00162] [EC:1.2.4.1]
KLTH0G08998g  KLTH0G08998p [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lth00010  Glycolysis / Gluconeogenesis
lth00053  Ascorbate and aldarate metabolism
lth00061  Fatty acid biosynthesis
lth00062  Fatty acid elongation
lth00071  Fatty acid degradation
lth00190  Oxidative phosphorylation
lth00220  Arginine biosynthesis
lth00250  Alanine, aspartate and glutamate metabolism
lth00280  Valine, leucine and isoleucine degradation
lth00350  Tyrosine metabolism
lth00470  D-Amino acid metabolism
lth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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