KEGG   PATHWAY: lto00630
Entry
lto00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Limnobacter thiooxidans
Class
Metabolism; Carbohydrate metabolism
Pathway map
lto00630  Glyoxylate and dicarboxylate metabolism
lto00630

Module
lto_M00012  Glyoxylate cycle [PATH:lto00630]
Other DBs
GO: 0046487 0043648
Organism
Limnobacter thiooxidans [GN:lto]
Gene
RGQ30_10970  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RGQ30_22950  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RGQ30_21410  malate synthase G [KO:K01638] [EC:2.3.3.9]
RGQ30_18760  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RGQ30_18690  citrate synthase [KO:K01647] [EC:2.3.3.1]
RGQ30_18970  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RGQ30_18920  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RGQ30_03960  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGQ30_09130  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGQ30_17220  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGQ30_18490  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
RGQ30_18530  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGQ30_18520  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RGQ30_05760  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
RGQ30_05750  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RGQ30_05740  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
RGQ30_12300  catalase [KO:K03781] [EC:1.11.1.6]
RGQ30_23370  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
RGQ30_26670  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
RGQ30_04490  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RGQ30_15220  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RGQ30_06890  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RGQ30_13490  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RGQ30_18640  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RGQ30_06360  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RGQ30_04650  glycerate kinase [KO:K11529] [EC:2.7.1.165]
RGQ30_01330  dmlA; multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RGQ30_00640  hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RGQ30_15110  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RGQ30_15120  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
RGQ30_15140  formate dehydrogenase subunit gamma [KO:K00127]
RGQ30_06380  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
RGQ30_26920  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lto00010  Glycolysis / Gluconeogenesis
lto00020  Citrate cycle (TCA cycle)
lto00030  Pentose phosphate pathway
lto00053  Ascorbate and aldarate metabolism
lto00071  Fatty acid degradation
lto00230  Purine metabolism
lto00250  Alanine, aspartate and glutamate metabolism
lto00260  Glycine, serine and threonine metabolism
lto00620  Pyruvate metabolism
lto00710  Carbon fixation by Calvin cycle
lto00750  Vitamin B6 metabolism
lto00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system