KEGG   PATHWAY: mab00020
Entry
mab00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacteroides abscessus ATCC 19977
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mab00020  Citrate cycle (TCA cycle)
mab00020

Module
mab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mab00020]
mab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mab00020]
mab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mab00020]
mab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mab00020]
mab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mab00020]
Other DBs
GO: 0006099
Organism
Mycobacteroides abscessus ATCC 19977 [GN:mab]
Gene
MAB_0932c  Putative citrate synthase CitA [KO:K01647] [EC:2.3.3.1]
MAB_0944  Probable citrate synthase I (GltA) [KO:K01647] [EC:2.3.3.1]
MAB_4619  Probable citrate synthase [KO:K01647] [EC:2.3.3.1]
MAB_2730  Probable aconitate hydratase ACN [KO:K01681] [EC:4.2.1.3]
MAB_3686c  Probable isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MAB_1393c  Probable 2-oxoglutarate dehydrogenase SucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MAB_0894c  Putative dihydrolipoamide dehydrogenase (LpdA) [KO:K00382] [EC:1.8.1.4]
MAB_4127c  Probable dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MAB_1594  Probable ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAB_1595  Probable ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAB_1057  Succinyl-CoA synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
MAB_1056  Succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
MAB_3675  Probable succinate dehydrogenase, flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
MAB_4422  Putative succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MAB_4423  Putative succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MAB_3676  Probable succinate dehydrogenase (iron-sulphur protein) SdhB [KO:K00240] [EC:1.3.5.1]
MAB_3673  Probable succinate dehydrogenase (cytochrome b-556 subunit) SdhC [KO:K00241]
MAB_3674  Probable succinate dehydrogenase, hydrophobic membrane anchor protein SdhD [KO:K00242]
MAB_1250c  Probable fumarate hydratase Fum [KO:K01679] [EC:4.2.1.2]
MAB_2681  Probable malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MAB_3159c  Probable malate:quinone oxidoreductase Mqo [KO:K00116] [EC:1.1.5.4]
MAB_3267c  Probable pyruvate carboxylase PCA [KO:K01958] [EC:6.4.1.1]
MAB_4502c  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MAB_2561c  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MAB_1884c  Probable pyruvate dehydrogenase E1 component AceE [KO:K00163] [EC:1.2.4.1]
MAB_1945c  Probable dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mab00010  Glycolysis / Gluconeogenesis
mab00053  Ascorbate and aldarate metabolism
mab00061  Fatty acid biosynthesis
mab00071  Fatty acid degradation
mab00190  Oxidative phosphorylation
mab00220  Arginine biosynthesis
mab00250  Alanine, aspartate and glutamate metabolism
mab00280  Valine, leucine and isoleucine degradation
mab00350  Tyrosine metabolism
mab00470  D-Amino acid metabolism
mab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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