KEGG   PATHWAY: mbak00020
Entry
mbak00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina barkeri 3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbak00020  Citrate cycle (TCA cycle)
mbak00020

Module
mbak_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbak00020]
mbak_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbak00020]
Other DBs
GO: 0006099
Organism
Methanosarcina barkeri 3 [GN:mbak]
Gene
MSBR3_2126  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSBR3_3141  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSBR3_2127  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSBR3_3140  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSBR3_1133  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSBR3_1132  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSBR3_0961  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSBR3_0960  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSBR3_1756  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSBR3_1876  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSBR3_1875  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSBR3_3454  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSBR3_0188  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBR3_3455  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBR3_3452  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSBR3_3453  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbak00010  Glycolysis / Gluconeogenesis
mbak00061  Fatty acid biosynthesis
mbak00071  Fatty acid degradation
mbak00190  Oxidative phosphorylation
mbak00220  Arginine biosynthesis
mbak00250  Alanine, aspartate and glutamate metabolism
mbak00280  Valine, leucine and isoleucine degradation
mbak00350  Tyrosine metabolism
mbak00470  D-Amino acid metabolism
mbak00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system