KEGG   PATHWAY: mbar00020
Entry
mbar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina barkeri 227
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbar00020  Citrate cycle (TCA cycle)
mbar00020

Module
mbar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbar00020]
mbar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbar00020]
Other DBs
GO: 0006099
Organism
Methanosarcina barkeri 227 [GN:mbar]
Gene
MSBR2_2049  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSBR2_3146  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSBR2_2048  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSBR2_3145  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSBR2_0193  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSBR2_0194  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSBR2_0826  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSBR2_0827  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSBR2_2906  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSBR2_2829  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSBR2_2830  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSBR2_3446  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSBR2_3447  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBR2_0816  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSBR2_3444  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSBR2_3445  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbar00010  Glycolysis / Gluconeogenesis
mbar00061  Fatty acid biosynthesis
mbar00071  Fatty acid degradation
mbar00190  Oxidative phosphorylation
mbar00220  Arginine biosynthesis
mbar00250  Alanine, aspartate and glutamate metabolism
mbar00280  Valine, leucine and isoleucine degradation
mbar00350  Tyrosine metabolism
mbar00470  D-Amino acid metabolism
mbar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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