KEGG   PATHWAY: metm00020
Entry
metm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina sp. MTP4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
metm00020  Citrate cycle (TCA cycle)
metm00020

Module
metm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:metm00020]
metm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:metm00020]
Other DBs
GO: 0006099
Organism
Methanosarcina sp. MTP4 [GN:metm]
Gene
MSMTP_3036  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSMTP_3038  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSMTP_0335  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSMTP_3037  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSMTP_0334  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSMTP_2270  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSMTP_2271  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSMTP_2147  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSMTP_2146  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MSMTP_1766  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSMTP_1767  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSMTP_2145  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MSMTP_2623  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSMTP_2747  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSMTP_2748  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSMTP_3219  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSMTP_3220  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSMTP_3217  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSMTP_3218  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
metm00010  Glycolysis / Gluconeogenesis
metm00061  Fatty acid biosynthesis
metm00071  Fatty acid degradation
metm00190  Oxidative phosphorylation
metm00220  Arginine biosynthesis
metm00250  Alanine, aspartate and glutamate metabolism
metm00280  Valine, leucine and isoleucine degradation
metm00350  Tyrosine metabolism
metm00470  D-Amino acid metabolism
metm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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