KEGG   PATHWAY: mfz00020
Entry
mfz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina flavescens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfz00020  Citrate cycle (TCA cycle)
mfz00020

Module
mfz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mfz00020]
mfz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfz00020]
Other DBs
GO: 0006099
Organism
Methanosarcina flavescens [GN:mfz]
Gene
AOB57_009505  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
AOB57_007030  isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
AOB57_009500  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
AOB57_007035  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
AOB57_002715  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOB57_002720  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOB57_012175  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
AOB57_012170  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AOB57_013475  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
AOB57_013480  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
AOB57_012165  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
AOB57_009800  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOB57_004670  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
AOB57_004675  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
AOB57_008490  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
AOB57_008485  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
AOB57_012690  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
AOB57_008500  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
AOB57_008495  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfz00010  Glycolysis / Gluconeogenesis
mfz00071  Fatty acid degradation
mfz00190  Oxidative phosphorylation
mfz00220  Arginine biosynthesis
mfz00250  Alanine, aspartate and glutamate metabolism
mfz00280  Valine, leucine and isoleucine degradation
mfz00350  Tyrosine metabolism
mfz00470  D-Amino acid metabolism
mfz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system