KEGG PATHWAY: ming00630

KEGG

PATHWAY: ming00630

Entry

ming00630                   Pathway

Name

Glyoxylate and dicarboxylate metabolism - Macadamia integrifolia (macadamia nut)

Class

Metabolism; Carbohydrate metabolism

Pathway map

Glyoxylate and dicarboxylate metabolism

Module

Glyoxylate cycle [PATH:ming00630]

Photorespiration [PATH:ming00630]

Glycine cleavage system [PATH:ming00630]

Other DBs

GO:	0046487 0043648

Organism

Macadamia integrifolia (macadamia nut) [GN:ming]

Gene

isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]

isocitrate lyase-like [KO:K01637] [EC:4.1.3.1 4.1.3.30]

acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]

acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]

malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]

malate dehydrogenase [KO:K00025] [EC:1.1.1.37]

malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]

malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]

malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]

malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]

malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]

malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]

malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]

malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]

citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]

citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]

aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]

aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]

aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]

acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]

acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]

peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]

(S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]

peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]

(S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]

(S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]

catalase [KO:K03781] [EC:1.11.1.6]

catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]

glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]

glyoxylate/succinic semialdehyde reductase 1 isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]

glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]

phosphoglycolate phosphatase 1A, chloroplastic-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]

phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]

rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]

ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]

ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]

serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]

serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]

glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]

ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial-like [KO:K00284] [EC:1.4.7.1]

glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]

glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]

glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]

glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]

LOW QUALITY PROTEIN: serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]

serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]

glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]

aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]

dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]

dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]

dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]

dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]

glycine cleavage system H protein, mitochondrial-like [KO:K02437]

glycine cleavage system H protein 2, mitochondrial [KO:K02437]

D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]

formate dehydrogenase, mitochondrial-like isoform X1 [KO:K00122] [EC:1.17.1.9]

formate dehydrogenase, mitochondrial-like isoform X1 [KO:K00122] [EC:1.17.1.9]

formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]

formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]

formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]

formamidase-like [KO:K01455] [EC:3.5.1.49]

formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]

formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]

formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]

formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]

formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]

formamidase-like [KO:K01455] [EC:3.5.1.49]

probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]

probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]

Compound

Oxygen

CO2

Ammonia

Pyruvate

Acetyl-CoA

L-Glutamate

2-Oxoglutarate

Hydrogen peroxide

Acetate

Oxaloacetate

Glycine

Succinate

Glyoxylate

Formate

L-Glutamine

L-Serine

Succinyl-CoA

Propanoyl-CoA

Glycerone phosphate

Butanoyl-CoA

(S)-Malate

Citrate

Glycolate

Hydroxypyruvate

3-Phospho-D-glycerate

Oxalate

D-Glycerate

Glycolaldehyde

Isocitrate

Oxalyl-CoA

Acetoacetyl-CoA

cis-Aconitate

meso-Tartaric acid

2-Phospho-D-glycerate

(S)-Methylmalonyl-CoA

Formyl-CoA

Crotonoyl-CoA

Pentanoyl-CoA

(R,R)-Tartaric acid

Dihydroxyfumarate

2-Phosphoglycolate

4-Hydroxy-2-oxoglutarate

2-Hydroxy-3-oxopropanoate

D-Ribulose 1,5-bisphosphate

(R)-Methylmalonyl-CoA

Ethylene glycol

Mesaconate

3-Ethylmalate

3-Oxalomalate

3-Propylmalate

Formyl phosphate

2-Hydroxy-3-oxoadipate

2-Hydroxy-3-oxosuccinate

trans-2,3-Epoxysuccinate

(R)-3-Hydroxybutanoyl-CoA

L-threo-3-Methylaspartate

L-Malyl-CoA

L-erythro-3-Methylmalyl-CoA

2-Methylfumaryl-CoA

N-Formylderivatives

(2S)-Ethylmalonyl-CoA

(2S)-Methylsuccinyl-CoA

(2R)-Ethylmalonyl-CoA

D-Ribulose 1-phosphate

Reference

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.

Journal

J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200

Reference

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07

Reference

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200

Reference

Authors

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM

Title

Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.

Journal

Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741

Reference

Authors

Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A

Title

Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.

Journal

Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910

Reference

Authors

Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA

Title

A methylaspartate cycle in haloarchaea.

Journal

Science 331:334-7 (2011)
DOI:10.1126/science.1196544

Reference

Authors

Serrano JA, Bonete MJ

Title

Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.

Journal

Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9

Related
pathway

Glycolysis / Gluconeogenesis

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Ascorbate and aldarate metabolism

Fatty acid degradation

Purine metabolism

Alanine, aspartate and glutamate metabolism

Glycine, serine and threonine metabolism

Pyruvate metabolism

Carbon fixation by Calvin cycle

Vitamin B6 metabolism

Nitrogen metabolism

KO pathway

LinkDB

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