KEGG   PATHWAY: mlr00020
Entry
mlr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Melampsora larici-populina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mlr00020  Citrate cycle (TCA cycle)
mlr00020

Module
mlr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mlr00020]
mlr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mlr00020]
mlr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mlr00020]
mlr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mlr00020]
mlr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mlr00020]
Other DBs
GO: 0006099
Organism
Melampsora larici-populina [GN:mlr]
Gene
MELLADRAFT_45441  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MELLADRAFT_50605  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MELLADRAFT_46071  hypothetical protein [KO:K01648] [EC:2.3.3.8]
MELLADRAFT_41372  mitochondrial aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MELLADRAFT_86745  hypothetical protein [KO:K00031] [EC:1.1.1.42]
MELLADRAFT_44219  hypothetical protein [KO:K00030] [EC:1.1.1.41]
MELLADRAFT_72384  hypothetical protein [KO:K00030] [EC:1.1.1.41]
MELLADRAFT_115101  hypothetical protein [KO:K00164] [EC:1.2.4.2]
MELLADRAFT_73918  hypothetical protein [KO:K00658] [EC:2.3.1.61]
MELLADRAFT_117424  hypothetical protein [KO:K00382] [EC:1.8.1.4]
MELLADRAFT_45876  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MELLADRAFT_89885  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
MELLADRAFT_44058  hypothetical protein [KO:K00234] [EC:1.3.5.1]
MELLADRAFT_117110  hypothetical protein [KO:K00235] [EC:1.3.5.1]
MELLADRAFT_77220  hypothetical protein [KO:K00236]
MELLADRAFT_35945  hypothetical protein [KO:K00237]
MELLADRAFT_34359  hypothetical protein [KO:K01679] [EC:4.2.1.2]
MELLADRAFT_44122  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MELLADRAFT_56433  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MELLADRAFT_93407  hypothetical protein [KO:K00026] [EC:1.1.1.37]
MELLADRAFT_43264  hypothetical protein [KO:K01958] [EC:6.4.1.1]
MELLADRAFT_46050  hypothetical protein [KO:K01958] [EC:6.4.1.1]
MELLADRAFT_43190  hypothetical protein [KO:K01610] [EC:4.1.1.49]
MELLADRAFT_36702  hypothetical protein [KO:K00161] [EC:1.2.4.1]
MELLADRAFT_49370  hypothetical protein [KO:K00162] [EC:1.2.4.1]
MELLADRAFT_50754  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mlr00010  Glycolysis / Gluconeogenesis
mlr00053  Ascorbate and aldarate metabolism
mlr00061  Fatty acid biosynthesis
mlr00062  Fatty acid elongation
mlr00071  Fatty acid degradation
mlr00190  Oxidative phosphorylation
mlr00220  Arginine biosynthesis
mlr00250  Alanine, aspartate and glutamate metabolism
mlr00280  Valine, leucine and isoleucine degradation
mlr00350  Tyrosine metabolism
mlr00470  D-Amino acid metabolism
mlr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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