KEGG   PATHWAY: mmac00020
Entry
mmac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina mazei C16
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmac00020  Citrate cycle (TCA cycle)
mmac00020

Module
mmac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmac00020]
mmac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmac00020]
Other DBs
GO: 0006099
Organism
Methanosarcina mazei C16 [GN:mmac]
Gene
MSMAC_3160  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSMAC_0304  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSMAC_3159  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSMAC_0303  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSMAC_0872  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSMAC_0873  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSMAC_2976  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSMAC_2975  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSMAC_1705  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSMAC_1579  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSMAC_1578  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSMAC_3346  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSMAC_3347  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSMAC_3344  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSMAC_3345  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmac00010  Glycolysis / Gluconeogenesis
mmac00061  Fatty acid biosynthesis
mmac00071  Fatty acid degradation
mmac00190  Oxidative phosphorylation
mmac00220  Arginine biosynthesis
mmac00250  Alanine, aspartate and glutamate metabolism
mmac00280  Valine, leucine and isoleucine degradation
mmac00350  Tyrosine metabolism
mmac00470  D-Amino acid metabolism
mmac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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