KEGG   PATHWAY: mmav00020
Entry
mmav00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanolobus mangrovi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmav00020  Citrate cycle (TCA cycle)
mmav00020

Module
mmav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmav00020]
mmav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmav00020]
Other DBs
GO: 0006099
Organism
Methanolobus mangrovi [GN:mmav]
Gene
RE476_05060  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RE476_06945  isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
RE476_05055  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RE476_06950  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RE476_01355  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RE476_01360  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RE476_05725  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
RE476_05730  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
RE476_11795  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RE476_06330  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
RE476_06325  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
RE476_09275  hypothetical protein [KO:K00169] [EC:1.2.7.1]
RE476_10250  porA; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
RE476_09270  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
RE476_10245  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
RE476_09280  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
RE476_10260  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
RE476_10255  porD; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmav00010  Glycolysis / Gluconeogenesis
mmav00053  Ascorbate and aldarate metabolism
mmav00071  Fatty acid degradation
mmav00190  Oxidative phosphorylation
mmav00220  Arginine biosynthesis
mmav00250  Alanine, aspartate and glutamate metabolism
mmav00280  Valine, leucine and isoleucine degradation
mmav00350  Tyrosine metabolism
mmav00470  D-Amino acid metabolism
mmav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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