KEGG   PATHWAY: mmes03018
Entry
mmes03018                   Pathway                                
Name
RNA degradation - Methylobacterium mesophilicum
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mmes03018  RNA degradation
mmes03018

Other DBs
GO: 0006401
Organism
Methylobacterium mesophilicum [GN:mmes]
Gene
MMSR116_07455  RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
MMSR116_09960  Rne/Rng family ribonuclease [KO:K08300] [EC:3.1.26.12]
MMSR116_26155  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
MMSR116_14830  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
MMSR116_20745  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
MMSR116_25770  DEAD/DEAH box helicase [KO:K11927] [EC:5.6.2.7]
MMSR116_30390  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
MMSR116_12285  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
MMSR116_25250  recQ; DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
MMSR116_05400  transcription termination factor Rho [KO:K03628]
MMSR116_24050  ribonuclease J [KO:K12574] [EC:3.1.-.-]
MMSR116_10105  dnaK; molecular chaperone DnaK [KO:K04043]
MMSR116_16710  groL; chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
MMSR116_02145  hfq; RNA chaperone Hfq [KO:K03666]
MMSR116_16515  RNA degradosome polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
MMSR116_14880  ppk2; polyphosphate kinase 2 [KO:K22468] [EC:2.7.4.34]
MMSR116_27900  CCA tRNA nucleotidyltransferase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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