KEGG   PATHWAY: mmet00020
Entry
mmet00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanococcoides methylutens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmet00020  Citrate cycle (TCA cycle)
mmet00020

Module
mmet_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmet00020]
mmet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmet00020]
Other DBs
GO: 0006099
Organism
Methanococcoides methylutens [GN:mmet]
Gene
MCMEM_1605  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MCMEM_1286  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MCMEM_1609  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MCMEM_1284  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MCMEM_1283  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MCMEM_0722  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCMEM_0721  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MCMEM_0879  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MCMEM_0878  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MCMEM_1393  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MCMEM_0568  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MCMEM_0567  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MCMEM_0347  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MCMEM_1237  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MCMEM_0348  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MCMEM_1236  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MCMEM_0345  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MCMEM_1238  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00172] [EC:1.2.7.1]
MCMEM_0346  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmet00010  Glycolysis / Gluconeogenesis
mmet00053  Ascorbate and aldarate metabolism
mmet00061  Fatty acid biosynthesis
mmet00071  Fatty acid degradation
mmet00190  Oxidative phosphorylation
mmet00220  Arginine biosynthesis
mmet00250  Alanine, aspartate and glutamate metabolism
mmet00280  Valine, leucine and isoleucine degradation
mmet00350  Tyrosine metabolism
mmet00470  D-Amino acid metabolism
mmet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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