KEGG   PATHWAY: mmon00020
Entry
mmon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium monacense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmon00020  Citrate cycle (TCA cycle)
mmon00020

Module
mmon_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmon00020]
mmon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmon00020]
mmon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmon00020]
mmon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmon00020]
mmon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmon00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium monacense [GN:mmon]
Gene
EWR22_24140  citrate synthase [KO:K01647] [EC:2.3.3.1]
EWR22_24155  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
EWR22_12445  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EWR22_06415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EWR22_20490  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EWR22_03330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EWR22_18405  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EWR22_18400  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EWR22_23375  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EWR22_23380  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EWR22_01360  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EWR22_06505  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EWR22_08340  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
EWR22_01355  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EWR22_06500  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EWR22_06515  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EWR22_06510  succinate dehydrogenase [KO:K00242]
EWR22_22320  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EWR22_10505  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EWR22_09870  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EWR22_00975  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EWR22_17400  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EWR22_05835  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EWR22_05840  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EWR22_17140  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
EWR22_05845  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
EWR22_26290  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmon00010  Glycolysis / Gluconeogenesis
mmon00053  Ascorbate and aldarate metabolism
mmon00061  Fatty acid biosynthesis
mmon00071  Fatty acid degradation
mmon00190  Oxidative phosphorylation
mmon00220  Arginine biosynthesis
mmon00250  Alanine, aspartate and glutamate metabolism
mmon00280  Valine, leucine and isoleucine degradation
mmon00350  Tyrosine metabolism
mmon00470  D-Amino acid metabolism
mmon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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