KEGG   PATHWAY: mrr00020
Entry
mrr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Moniliophthora roreri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrr00020  Citrate cycle (TCA cycle)
mrr00020

Module
mrr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mrr00020]
mrr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mrr00020]
mrr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mrr00020]
mrr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mrr00020]
mrr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mrr00020]
Other DBs
GO: 0006099
Organism
Moniliophthora roreri [GN:mrr]
Gene
Moror_14277  peroxysomal citrate synthase [KO:K01647] [EC:2.3.3.1]
Moror_20  citrate synthase [KO:K01647] [EC:2.3.3.1]
Moror_16546  atp-citrate synthase [KO:K01648] [EC:2.3.3.8]
Moror_7030  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Moror_4688  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Moror_7399  isocitrate nad-dependent [KO:K00030] [EC:1.1.1.41]
Moror_7433  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Moror_3227  oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
Moror_4979  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Moror_5051  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Moror_925  succinyl- ligase subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Moror_220  succinate- ligase (adp-forming) [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Moror_8959  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
Moror_13658  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
Moror_6267  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
Moror_2412  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
Moror_3016  mitochondrial inner membrane protein [KO:K00237]
Moror_68  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Moror_12225  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
Moror_13005  malate nad-dependent [KO:K00026] [EC:1.1.1.37]
Moror_6913  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Moror_5660  hypothetical protein [KO:K01958] [EC:6.4.1.1]
Moror_16330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Moror_2  pyruvate dehydrogenase e1 component alpha mitochondrial [KO:K00161] [EC:1.2.4.1]
Moror_7437  pyruvate dehydrogenase e1 beta subunit [KO:K00162] [EC:1.2.4.1]
Moror_63  dihydrolipoamide s-acetyltransferase (e2 component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mrr00010  Glycolysis / Gluconeogenesis
mrr00053  Ascorbate and aldarate metabolism
mrr00061  Fatty acid biosynthesis
mrr00062  Fatty acid elongation
mrr00071  Fatty acid degradation
mrr00190  Oxidative phosphorylation
mrr00220  Arginine biosynthesis
mrr00250  Alanine, aspartate and glutamate metabolism
mrr00280  Valine, leucine and isoleucine degradation
mrr00350  Tyrosine metabolism
mrr00470  D-Amino acid metabolism
mrr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system