KEGG   PATHWAY: mrz00630
Entry
mrz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Marinobacterium rhizophilum
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrz00630  Glyoxylate and dicarboxylate metabolism
mrz00630

Module
mrz_M00012  Glyoxylate cycle [PATH:mrz00630]
mrz_M00621  Glycine cleavage system [PATH:mrz00630]
Other DBs
GO: 0046487 0043648
Organism
Marinobacterium rhizophilum [GN:mrz]
Gene
KDW95_00130  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
KDW95_12005  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KDW95_03600  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
KDW95_14505  malate synthase G [KO:K01638] [EC:2.3.3.9]
KDW95_06140  malate synthase G [KO:K01638] [EC:2.3.3.9]
KDW95_07635  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KDW95_09015  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KDW95_00185  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KDW95_21680  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KDW95_06195  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KDW95_09555  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KDW95_16655  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KDW95_01025  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
KDW95_01165  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KDW95_01185  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
KDW95_01260  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
KDW95_01500  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
KDW95_01630  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KDW95_05110  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
KDW95_05655  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
KDW95_10720  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
KDW95_07515  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
KDW95_06130  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KDW95_06125  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
KDW95_06120  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
KDW95_09720  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
KDW95_08645  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
KDW95_20900  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
KDW95_22665  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
KDW95_07715  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
KDW95_11510  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
KDW95_21210  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
KDW95_14605  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
KDW95_16195  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
KDW95_18420  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KDW95_23285  glutamine synthetase III [KO:K01915] [EC:6.3.1.2]
KDW95_04650  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
KDW95_13125  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KDW95_13240  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KDW95_14285  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KDW95_16170  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KDW95_02790  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KDW95_16185  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
KDW95_02800  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
KDW95_02770  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KDW95_08980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDW95_16180  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KDW95_17255  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KDW95_02795  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KDW95_17600  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
KDW95_06150  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
KDW95_17595  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
KDW95_06155  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
KDW95_17590  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
KDW95_06160  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
KDW95_07610  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
KDW95_23230  glycerate kinase [KO:K00865] [EC:2.7.1.165]
KDW95_20465  hypothetical protein [KO:K15918] [EC:2.7.1.31]
KDW95_21905  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
KDW95_19300  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
KDW95_04020  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KDW95_05690  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
KDW95_05680  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
KDW95_05675  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
KDW95_05670  formate dehydrogenase subunit gamma [KO:K00127]
KDW95_10660  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KDW95_13035  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KDW95_13215  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KDW95_18100  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KDW95_20660  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
KDW95_00010  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mrz00010  Glycolysis / Gluconeogenesis
mrz00020  Citrate cycle (TCA cycle)
mrz00030  Pentose phosphate pathway
mrz00053  Ascorbate and aldarate metabolism
mrz00071  Fatty acid degradation
mrz00230  Purine metabolism
mrz00250  Alanine, aspartate and glutamate metabolism
mrz00260  Glycine, serine and threonine metabolism
mrz00620  Pyruvate metabolism
mrz00710  Carbon fixation by Calvin cycle
mrz00750  Vitamin B6 metabolism
mrz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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