KEGG   PATHWAY: msec00630
Entry
msec00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Marinobacterium sediminicola
Class
Metabolism; Carbohydrate metabolism
Pathway map
msec00630  Glyoxylate and dicarboxylate metabolism
msec00630

Module
msec_M00621  Glycine cleavage system [PATH:msec00630]
Other DBs
GO: 0046487 0043648
Organism
Marinobacterium sediminicola [GN:msec]
Gene
LN244_07760  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
LN244_06455  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LN244_10200  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LN244_13955  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LN244_01385  malate synthase G [KO:K01638] [EC:2.3.3.9]
LN244_04625  malate synthase G [KO:K01638] [EC:2.3.3.9]
LN244_06895  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LN244_08830  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
LN244_07480  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LN244_05160  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LN244_05180  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LN244_10255  thiolase family protein [KO:K00626] [EC:2.3.1.9]
LN244_12310  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
LN244_14600  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LN244_11160  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LN244_12395  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LN244_06510  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
LN244_10085  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
LN244_12405  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
LN244_04635  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LN244_04640  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
LN244_04645  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LN244_06245  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
LN244_08265  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
LN244_13465  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LN244_08115  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LN244_01120  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LN244_02135  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LN244_01650  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LN244_10910  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LN244_01230  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
LN244_15460  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LN244_06930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LN244_15455  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LN244_08175  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LN244_03055  hypothetical protein [KO:K15918] [EC:2.7.1.31]
LN244_09935  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LN244_01095  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LN244_13030  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
msec00010  Glycolysis / Gluconeogenesis
msec00020  Citrate cycle (TCA cycle)
msec00030  Pentose phosphate pathway
msec00053  Ascorbate and aldarate metabolism
msec00071  Fatty acid degradation
msec00230  Purine metabolism
msec00250  Alanine, aspartate and glutamate metabolism
msec00260  Glycine, serine and threonine metabolism
msec00620  Pyruvate metabolism
msec00710  Carbon fixation by Calvin cycle
msec00750  Vitamin B6 metabolism
msec00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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