KEGG   PATHWAY: msj00020
Entry
msj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina siciliae C2J
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msj00020  Citrate cycle (TCA cycle)
msj00020

Module
msj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msj00020]
msj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msj00020]
Other DBs
GO: 0006099
Organism
Methanosarcina siciliae C2J [GN:msj]
Gene
MSSAC_0233  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSSAC_3820  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSSAC_0234  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSSAC_3819  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSSAC_1786  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSSAC_2966  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSSAC_1785  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSSAC_2965  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSSAC_1705  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSSAC_1704  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSSAC_0757  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSSAC_0611  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSSAC_0610  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSSAC_4352  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSSAC_4351  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSSAC_2482  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSSAC_4354  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSSAC_4353  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msj00010  Glycolysis / Gluconeogenesis
msj00071  Fatty acid degradation
msj00190  Oxidative phosphorylation
msj00220  Arginine biosynthesis
msj00250  Alanine, aspartate and glutamate metabolism
msj00280  Valine, leucine and isoleucine degradation
msj00350  Tyrosine metabolism
msj00470  D-Amino acid metabolism
msj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system