KEGG   PATHWAY: msze00630
Entry
msze00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Methylocaldum szegediense
Class
Metabolism; Carbohydrate metabolism
Pathway map
msze00630  Glyoxylate and dicarboxylate metabolism
msze00630

Module
msze_M00621  Glycine cleavage system [PATH:msze00630]
Other DBs
GO: 0046487 0043648
Organism
Methylocaldum szegediense [GN:msze]
Gene
MSZNOR_1678  acs; acetyl-CoA synthetase (AMP-forming) [KO:K01895] [EC:6.2.1.1]
MSZNOR_4364  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSZNOR_0577  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MSZNOR_0733  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MSZNOR_1075  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MSZNOR_0593  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MSZNOR_4942  sucD; succinyl-CoA synthetase subunit alpha [KO:K08692] [EC:6.2.1.9]
MSZNOR_4943  sucC; succinyl-CoA synthetase subunit beta [KO:K14067] [EC:6.2.1.9]
MSZNOR_0816  yqeF; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
MSZNOR_0818  phaB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
MSZNOR_4946  mcl; L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
MSZNOR_0377  glcD; glycolate dehydrogenase, putative FAD-linked subunit [KO:K00104] [EC:1.1.99.14]
MSZNOR_0378  glcE; glycolate dehydrogenase, putative FAD-binding subunit [KO:K11472] [EC:1.1.99.14]
MSZNOR_0379  glcF; glycolate dehydrogenase, putative iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
MSZNOR_2545  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
MSZNOR_1329  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MSZNOR_3559  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MSZNOR_1352  cbbL; Ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
MSZNOR_1353  cbbS; Ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
MSZNOR_1686  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
MSZNOR_1689  alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
MSZNOR_1155  gltB; glutamate synthase subunit GltB [KO:K00284] [EC:1.4.7.1]
MSZNOR_4253  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
MSZNOR_0957  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
MSZNOR_3002  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
MSZNOR_3001  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
MSZNOR_2553  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
MSZNOR_3812  lpd; lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSZNOR_3003  gcvH; glycine cleavage system H protein [KO:K02437]
MSZNOR_1688  D-glycerate 3-kinase [KO:K15918] [EC:2.7.1.31]
MSZNOR_2534  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MSZNOR_2341  Formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
MSZNOR_4608  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
MSZNOR_4606  formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
MSZNOR_0095  Formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
MSZNOR_4605  Formate dehydrogenase beta subunit [KO:K00124]
MSZNOR_0094  fdnH; formate dehydrogenase N subunit beta [KO:K00124]
MSZNOR_4604  Formate dehydrogenase gamma subunit [KO:K00127]
MSZNOR_0093  fdoI; formate dehydrogenase O subunit gamma [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
msze00010  Glycolysis / Gluconeogenesis
msze00020  Citrate cycle (TCA cycle)
msze00030  Pentose phosphate pathway
msze00053  Ascorbate and aldarate metabolism
msze00071  Fatty acid degradation
msze00230  Purine metabolism
msze00250  Alanine, aspartate and glutamate metabolism
msze00260  Glycine, serine and threonine metabolism
msze00620  Pyruvate metabolism
msze00710  Carbon fixation by Calvin cycle
msze00750  Vitamin B6 metabolism
msze00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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